Results 61 - 68 of 68 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 16369 | 3' | -54.4 | NC_004084.1 | + | 53382 | 0.66 | 0.768794 |
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Target: 5'- aUCGCCGggucaacguacucGCGGCUgGucgCCaGGACGUc -3' miRNA: 3'- aAGCGGU-------------UGCCGAgCua-GGaCUUGCG- -5' |
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| 16369 | 3' | -54.4 | NC_004084.1 | + | 12035 | 0.66 | 0.769813 |
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Target: 5'- aUCGUCGAUucgaccugaagGGCgUCGGugUCCUGGACGa -3' miRNA: 3'- aAGCGGUUG-----------CCG-AGCU--AGGACUUGCg -5' |
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| 16369 | 3' | -54.4 | NC_004084.1 | + | 23389 | 0.66 | 0.769813 |
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Target: 5'- -aCGCCucagcguACaGUucuugUCGAUCCUGGGCGUc -3' miRNA: 3'- aaGCGGu------UGcCG-----AGCUAGGACUUGCG- -5' |
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| 16369 | 3' | -54.4 | NC_004084.1 | + | 43683 | 0.66 | 0.769813 |
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Target: 5'- --gGCCAGCGGCcguacucgCGAUCCcacUGGAggaucCGCg -3' miRNA: 3'- aagCGGUUGCCGa-------GCUAGG---ACUU-----GCG- -5' |
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| 16369 | 3' | -54.4 | NC_004084.1 | + | 43803 | 0.66 | 0.779924 |
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Target: 5'- aUUgGCCcaacuAAUGGCUCGAagCUGAuccacuucgucgACGCg -3' miRNA: 3'- -AAgCGG-----UUGCCGAGCUagGACU------------UGCG- -5' |
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| 16369 | 3' | -54.4 | NC_004084.1 | + | 4549 | 0.66 | 0.779924 |
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Target: 5'- cUUCGCCAGCucgaaCUCGAUCgUccagucGGGCGCg -3' miRNA: 3'- -AAGCGGUUGcc---GAGCUAGgA------CUUGCG- -5' |
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| 16369 | 3' | -54.4 | NC_004084.1 | + | 14701 | 0.65 | 0.785917 |
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Target: 5'- gUCGCCAucgAUGGCguccuggagcucgUUGAgaucguuguagaucUCCUGAGCGUc -3' miRNA: 3'- aAGCGGU---UGCCG-------------AGCU--------------AGGACUUGCG- -5' |
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| 16369 | 3' | -54.4 | NC_004084.1 | + | 22183 | 0.65 | 0.78691 |
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Target: 5'- aUUCGCCAAUucgucugcgucguaGaGgUCGA-CCUGAACGUu -3' miRNA: 3'- -AAGCGGUUG--------------C-CgAGCUaGGACUUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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