miRNA display CGI


Results 41 - 60 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16369 3' -54.4 NC_004084.1 + 40518 0.73 0.382384
Target:  5'- gUCGCCcuCGGcCUCGAUCUcGAACaGCu -3'
miRNA:   3'- aAGCGGuuGCC-GAGCUAGGaCUUG-CG- -5'
16369 3' -54.4 NC_004084.1 + 43467 0.7 0.541729
Target:  5'- -gCGUCGACGGCcacUCGAgguggugcUCCUGgAGCGUg -3'
miRNA:   3'- aaGCGGUUGCCG---AGCU--------AGGAC-UUGCG- -5'
16369 3' -54.4 NC_004084.1 + 43683 0.66 0.769813
Target:  5'- --gGCCAGCGGCcguacucgCGAUCCcacUGGAggaucCGCg -3'
miRNA:   3'- aagCGGUUGCCGa-------GCUAGG---ACUU-----GCG- -5'
16369 3' -54.4 NC_004084.1 + 43787 0.68 0.651661
Target:  5'- cUCGCCGGCGGa--GAgUCCggcggcgagGAGCGCc -3'
miRNA:   3'- aAGCGGUUGCCgagCU-AGGa--------CUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 43803 0.66 0.779924
Target:  5'- aUUgGCCcaacuAAUGGCUCGAagCUGAuccacuucgucgACGCg -3'
miRNA:   3'- -AAgCGG-----UUGCCGAGCUagGACU------------UGCG- -5'
16369 3' -54.4 NC_004084.1 + 44035 0.66 0.759559
Target:  5'- cUCGCCcucccaGGC-CGccUCCUGAGCGUc -3'
miRNA:   3'- aAGCGGuug---CCGaGCu-AGGACUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 44357 0.69 0.563405
Target:  5'- gUCGCggugaCAACGGCgagCGAcaccUCCUGAACa- -3'
miRNA:   3'- aAGCG-----GUUGCCGa--GCU----AGGACUUGcg -5'
16369 3' -54.4 NC_004084.1 + 44538 0.7 0.520338
Target:  5'- cUCGCUccggAACGG-UCGAUgcaCUGAACGCg -3'
miRNA:   3'- aAGCGG----UUGCCgAGCUAg--GACUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 45550 0.67 0.684727
Target:  5'- -aCGCCGAacgaggcuCGGCuUCGAUCCgcGGGCGg -3'
miRNA:   3'- aaGCGGUU--------GCCG-AGCUAGGa-CUUGCg -5'
16369 3' -54.4 NC_004084.1 + 46285 0.67 0.714103
Target:  5'- aUCGCCGAUGGCggucaagaaccccgUCaggauGAUCgaGAGCGUg -3'
miRNA:   3'- aAGCGGUUGCCG--------------AG-----CUAGgaCUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 47291 0.67 0.717334
Target:  5'- -aCGuCCAGCGGCUCugggacAUCCUucGAGcCGCg -3'
miRNA:   3'- aaGC-GGUUGCCGAGc-----UAGGA--CUU-GCG- -5'
16369 3' -54.4 NC_004084.1 + 47386 0.72 0.438615
Target:  5'- gUCGUCGACGGCgagcUCCaGGGCGCg -3'
miRNA:   3'- aAGCGGUUGCCGagcuAGGaCUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 47392 0.74 0.339336
Target:  5'- aUCGCCGuucGCGGCUCGAaggaugUCCcagagccgcUGGACGUc -3'
miRNA:   3'- aAGCGGU---UGCCGAGCU------AGG---------ACUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 47661 0.7 0.499286
Target:  5'- gUCGCCAcCGcGCUCGcgaacGUCCUcGAACGg -3'
miRNA:   3'- aAGCGGUuGC-CGAGC-----UAGGA-CUUGCg -5'
16369 3' -54.4 NC_004084.1 + 49210 0.67 0.728047
Target:  5'- gUCGCCuggucCGGCUCcuucaGAUCgUG-ACGCu -3'
miRNA:   3'- aAGCGGuu---GCCGAG-----CUAGgACuUGCG- -5'
16369 3' -54.4 NC_004084.1 + 51719 0.66 0.749171
Target:  5'- aUCGCCGGCGuugacCUCGAga-UGGACGUc -3'
miRNA:   3'- aAGCGGUUGCc----GAGCUaggACUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 52042 0.66 0.759559
Target:  5'- gUCGCCGugGaGCggGAugUCCUGGAccuCGCc -3'
miRNA:   3'- aAGCGGUugC-CGagCU--AGGACUU---GCG- -5'
16369 3' -54.4 NC_004084.1 + 52546 0.67 0.706535
Target:  5'- cUUCGCCu-CGGCcaUCGA--CUGAGCGUu -3'
miRNA:   3'- -AAGCGGuuGCCG--AGCUagGACUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 53382 0.66 0.768794
Target:  5'- aUCGCCGggucaacguacucGCGGCUgGucgCCaGGACGUc -3'
miRNA:   3'- aAGCGGU-------------UGCCGAgCua-GGaCUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 54032 0.7 0.530994
Target:  5'- aUUCGCCuucgacgagGACGGCUaCGGU--UGGACGCg -3'
miRNA:   3'- -AAGCGG---------UUGCCGA-GCUAggACUUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.