miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16369 3' -54.4 NC_004084.1 + 21485 0.67 0.717334
Target:  5'- -cCGaCCGACGGCgauAUCUgGAACGCg -3'
miRNA:   3'- aaGC-GGUUGCCGagcUAGGaCUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 47291 0.67 0.717334
Target:  5'- -aCGuCCAGCGGCUCugggacAUCCUucGAGcCGCg -3'
miRNA:   3'- aaGC-GGUUGCCGAGc-----UAGGA--CUU-GCG- -5'
16369 3' -54.4 NC_004084.1 + 46285 0.67 0.714103
Target:  5'- aUCGCCGAUGGCggucaagaaccccgUCaggauGAUCgaGAGCGUg -3'
miRNA:   3'- aAGCGGUUGCCG--------------AG-----CUAGgaCUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 52546 0.67 0.706535
Target:  5'- cUUCGCCu-CGGCcaUCGA--CUGAGCGUu -3'
miRNA:   3'- -AAGCGGuuGCCG--AGCUagGACUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 20293 0.67 0.706535
Target:  5'- -aCGUCGACGuGCUUGcgCCgGAAUGUu -3'
miRNA:   3'- aaGCGGUUGC-CGAGCuaGGaCUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 115 0.67 0.706535
Target:  5'- aUCgGCCGACGGCg-GGUCUgc-ACGCa -3'
miRNA:   3'- aAG-CGGUUGCCGagCUAGGacuUGCG- -5'
16369 3' -54.4 NC_004084.1 + 16919 0.67 0.706535
Target:  5'- gUCGCCAGCGGCauccgcgaUCGucuUCCguucuCGCc -3'
miRNA:   3'- aAGCGGUUGCCG--------AGCu--AGGacuu-GCG- -5'
16369 3' -54.4 NC_004084.1 + 15557 0.67 0.706535
Target:  5'- -aCGUCGACGGgUCGGUCgau-GCGCu -3'
miRNA:   3'- aaGCGGUUGCCgAGCUAGgacuUGCG- -5'
16369 3' -54.4 NC_004084.1 + 45550 0.67 0.684727
Target:  5'- -aCGCCGAacgaggcuCGGCuUCGAUCCgcGGGCGg -3'
miRNA:   3'- aaGCGGUU--------GCCG-AGCUAGGa-CUUGCg -5'
16369 3' -54.4 NC_004084.1 + 22258 0.67 0.684727
Target:  5'- cUCGCCuacCGGgUCGAcgUCCUcGAguGCGCc -3'
miRNA:   3'- aAGCGGuu-GCCgAGCU--AGGA-CU--UGCG- -5'
16369 3' -54.4 NC_004084.1 + 8169 0.68 0.673742
Target:  5'- -cCGCCAACGGCga---CgaGGACGCa -3'
miRNA:   3'- aaGCGGUUGCCGagcuaGgaCUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 472 0.68 0.673742
Target:  5'- gUUGCC--CGGUucgucgccUCGAUCCUGcuGGCGCa -3'
miRNA:   3'- aAGCGGuuGCCG--------AGCUAGGAC--UUGCG- -5'
16369 3' -54.4 NC_004084.1 + 1660 0.68 0.673742
Target:  5'- cUCGUcauCAugGGCUCGucgggcgaCCUGAucgACGCg -3'
miRNA:   3'- aAGCG---GUugCCGAGCua------GGACU---UGCG- -5'
16369 3' -54.4 NC_004084.1 + 16862 0.68 0.673742
Target:  5'- -aCGCC-GCGGCgaaCGGUgCgagGAGCGCc -3'
miRNA:   3'- aaGCGGuUGCCGa--GCUAgGa--CUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 22391 0.68 0.673742
Target:  5'- cUUCGuCCGGCGGCguaUCGucaucgCC-GAACGCg -3'
miRNA:   3'- -AAGC-GGUUGCCG---AGCua----GGaCUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 4773 0.68 0.651661
Target:  5'- cUCGU---CGGCUCGGUCCUcGACGa -3'
miRNA:   3'- aAGCGguuGCCGAGCUAGGAcUUGCg -5'
16369 3' -54.4 NC_004084.1 + 43787 0.68 0.651661
Target:  5'- cUCGCCGGCGGa--GAgUCCggcggcgagGAGCGCc -3'
miRNA:   3'- aAGCGGUUGCCgagCU-AGGa--------CUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 57485 0.68 0.640588
Target:  5'- cUCGCCGGCGaCgucgacgCGAUCggGGGCGCg -3'
miRNA:   3'- aAGCGGUUGCcGa------GCUAGgaCUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 4174 0.68 0.618429
Target:  5'- cUCGCCGACGGCgcugaUCGcUCC--GACGUc -3'
miRNA:   3'- aAGCGGUUGCCG-----AGCuAGGacUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 39084 0.69 0.607363
Target:  5'- cUCGCgAgaagaggcugaGCGGCaguUCGGUUCUGAAgGCg -3'
miRNA:   3'- aAGCGgU-----------UGCCG---AGCUAGGACUUgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.