miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16369 5' -62.3 NC_004084.1 + 8964 0.66 0.430543
Target:  5'- gCGGCgacgaagacGGCGGGA-CGAGGGCa---GCu -3'
miRNA:   3'- -GCCG---------CCGCCCUaGCUCCCGcuagCGc -5'
16369 5' -62.3 NC_004084.1 + 43754 0.66 0.430543
Target:  5'- cCGGCcgggacgcucGCGGGcAUCGAcuGGGCGcUCGCc -3'
miRNA:   3'- -GCCGc---------CGCCC-UAGCU--CCCGCuAGCGc -5'
16369 5' -62.3 NC_004084.1 + 35571 0.66 0.430543
Target:  5'- cCGuuGGuCGGGAUCuc-GGCGAUCGCc -3'
miRNA:   3'- -GCcgCC-GCCCUAGcucCCGCUAGCGc -5'
16369 5' -62.3 NC_004084.1 + 51346 0.66 0.395436
Target:  5'- uCGGcCGGgGuGGuUCGGGGuCGGUCGCa -3'
miRNA:   3'- -GCC-GCCgC-CCuAGCUCCcGCUAGCGc -5'
16369 5' -62.3 NC_004084.1 + 51403 0.67 0.36223
Target:  5'- uGGCGGCcgacgccgucgaGGccuUCGAGGGCGAcaCGCu -3'
miRNA:   3'- gCCGCCG------------CCcu-AGCUCCCGCUa-GCGc -5'
16369 5' -62.3 NC_004084.1 + 57689 0.67 0.36223
Target:  5'- aGGCGGCGuauAUCGAGGGaCGAgacgaugaaCGCa -3'
miRNA:   3'- gCCGCCGCcc-UAGCUCCC-GCUa--------GCGc -5'
16369 5' -62.3 NC_004084.1 + 28402 0.67 0.341709
Target:  5'- aCGGCGGCGaGcUCGAGGugcucacuacucgccGCcccGAUCGCGa -3'
miRNA:   3'- -GCCGCCGCcCuAGCUCC---------------CG---CUAGCGC- -5'
16369 5' -62.3 NC_004084.1 + 58101 0.67 0.338627
Target:  5'- uCGGCGGCcucaugcaGGAUCG-GGGCuacacccuUCGCGa -3'
miRNA:   3'- -GCCGCCGc-------CCUAGCuCCCGcu------AGCGC- -5'
16369 5' -62.3 NC_004084.1 + 54878 0.68 0.308928
Target:  5'- gGGCGucauCGGGAcuaUgGAGGGCGAUCaguaGCGc -3'
miRNA:   3'- gCCGCc---GCCCU---AgCUCCCGCUAG----CGC- -5'
16369 5' -62.3 NC_004084.1 + 10190 0.7 0.243492
Target:  5'- -cGCGGCGGGAgacuUCucaGGCGAUCGCc -3'
miRNA:   3'- gcCGCCGCCCU----AGcucCCGCUAGCGc -5'
16369 5' -62.3 NC_004084.1 + 43958 0.71 0.21004
Target:  5'- aGGCGGCcuGGGAgggCGAGGGaaCGA-CGCu -3'
miRNA:   3'- gCCGCCG--CCCUa--GCUCCC--GCUaGCGc -5'
16369 5' -62.3 NC_004084.1 + 41892 0.73 0.154919
Target:  5'- aCGGaccCGGCGGGcuccUCGAGGuCGAUCGUGa -3'
miRNA:   3'- -GCC---GCCGCCCu---AGCUCCcGCUAGCGC- -5'
16369 5' -62.3 NC_004084.1 + 39257 0.73 0.143348
Target:  5'- gGGCGGCGGGAa-GAuGGUGGUCGuCGa -3'
miRNA:   3'- gCCGCCGCCCUagCUcCCGCUAGC-GC- -5'
16369 5' -62.3 NC_004084.1 + 1226 1.07 0.000402
Target:  5'- uCGGCGGCGGGAUCGAGGGCGAUCGCGc -3'
miRNA:   3'- -GCCGCCGCCCUAGCUCCCGCUAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.