miRNA display CGI


Results 1 - 20 of 21 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1637 3' -47.6 NC_001347.2 + 47578 0.66 0.999988
Target:  5'- -aGAGGGCcu-GUCGGAGAugGC-CGUGa -3'
miRNA:   3'- ggUUUCCGauuCAGCCUUU--UGaGCGC- -5'
1637 3' -47.6 NC_001347.2 + 139706 0.66 0.999988
Target:  5'- aCAGucaGC--AGUCGGGAAGCUgGCGc -3'
miRNA:   3'- gGUUuc-CGauUCAGCCUUUUGAgCGC- -5'
1637 3' -47.6 NC_001347.2 + 17515 0.66 0.999978
Target:  5'- aCGGAGGCcGAGguuUCGGAagccgaaguggAAGCUCGaCGc -3'
miRNA:   3'- gGUUUCCGaUUC---AGCCU-----------UUUGAGC-GC- -5'
1637 3' -47.6 NC_001347.2 + 98738 0.66 0.99997
Target:  5'- gCAGAauGGCUuccAGGUCGGcgcccGAGACgCGCGg -3'
miRNA:   3'- gGUUU--CCGA---UUCAGCC-----UUUUGaGCGC- -5'
1637 3' -47.6 NC_001347.2 + 136128 0.67 0.99993
Target:  5'- gUggGGGgUAGGgCGGGAGGCagGCGg -3'
miRNA:   3'- gGuuUCCgAUUCaGCCUUUUGagCGC- -5'
1637 3' -47.6 NC_001347.2 + 85358 0.67 0.999908
Target:  5'- cCCGc-GGCUAGGcCG--AGACUCGCGu -3'
miRNA:   3'- -GGUuuCCGAUUCaGCcuUUUGAGCGC- -5'
1637 3' -47.6 NC_001347.2 + 102038 0.68 0.999847
Target:  5'- uCCGAcuGGGCgaaaaaacGGUgauuaUGGAAAACUUGCGg -3'
miRNA:   3'- -GGUU--UCCGau------UCA-----GCCUUUUGAGCGC- -5'
1637 3' -47.6 NC_001347.2 + 124885 0.68 0.999804
Target:  5'- uCCcGAGGCac-GUCGGGGcuGugUCGCa -3'
miRNA:   3'- -GGuUUCCGauuCAGCCUU--UugAGCGc -5'
1637 3' -47.6 NC_001347.2 + 56783 0.68 0.999751
Target:  5'- aCAGucaGCUGAGUCuGGGAGACcCGCu -3'
miRNA:   3'- gGUUuc-CGAUUCAG-CCUUUUGaGCGc -5'
1637 3' -47.6 NC_001347.2 + 13758 0.68 0.999605
Target:  5'- gCCAGAuGGCgacgGAcGUCGGGAccGACggaCGCGa -3'
miRNA:   3'- -GGUUU-CCGa---UU-CAGCCUU--UUGa--GCGC- -5'
1637 3' -47.6 NC_001347.2 + 52519 0.68 0.999605
Target:  5'- gCCGuGGuGCUGGGUcagugccagCGGGAAAC-CGCGg -3'
miRNA:   3'- -GGUuUC-CGAUUCA---------GCCUUUUGaGCGC- -5'
1637 3' -47.6 NC_001347.2 + 14075 0.69 0.99944
Target:  5'- uCCGAAcGCUAGGUCGGuucucAGACcgaggcaaaucaacgUCGCGa -3'
miRNA:   3'- -GGUUUcCGAUUCAGCCu----UUUG---------------AGCGC- -5'
1637 3' -47.6 NC_001347.2 + 195116 0.69 0.999391
Target:  5'- aCGAugcuGGUUAAGUUGGccGAGACgcugCGCGg -3'
miRNA:   3'- gGUUu---CCGAUUCAGCC--UUUUGa---GCGC- -5'
1637 3' -47.6 NC_001347.2 + 174638 0.69 0.998883
Target:  5'- gCGAAGGC--GGUCGGucuacgucuACUCGCc -3'
miRNA:   3'- gGUUUCCGauUCAGCCuuu------UGAGCGc -5'
1637 3' -47.6 NC_001347.2 + 202326 0.71 0.997246
Target:  5'- --cGGGGCUGGGUggagaGGGAAGgUCGCGc -3'
miRNA:   3'- gguUUCCGAUUCAg----CCUUUUgAGCGC- -5'
1637 3' -47.6 NC_001347.2 + 78375 0.71 0.996751
Target:  5'- cCCGgcGGCgccguGGUgGGAGGACcCGCGg -3'
miRNA:   3'- -GGUuuCCGau---UCAgCCUUUUGaGCGC- -5'
1637 3' -47.6 NC_001347.2 + 87202 0.73 0.982736
Target:  5'- gCAgcGGCaUGGGUCGGAAAGCagggugguaacauUCGCGc -3'
miRNA:   3'- gGUuuCCG-AUUCAGCCUUUUG-------------AGCGC- -5'
1637 3' -47.6 NC_001347.2 + 207549 0.74 0.976183
Target:  5'- gCGGcAGGUcGAGUUGGAGGACUUGCu -3'
miRNA:   3'- gGUU-UCCGaUUCAGCCUUUUGAGCGc -5'
1637 3' -47.6 NC_001347.2 + 19301 0.75 0.964383
Target:  5'- cCC--AGGCUcccuacccGUCGGAAGACUCGCc -3'
miRNA:   3'- -GGuuUCCGAuu------CAGCCUUUUGAGCGc -5'
1637 3' -47.6 NC_001347.2 + 106140 0.77 0.92429
Target:  5'- uUAAAGGCUGAGcCGGcccuCUCGCGc -3'
miRNA:   3'- gGUUUCCGAUUCaGCCuuuuGAGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.