miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1637 5' -55.1 NC_001347.2 + 156826 0.66 0.979406
Target:  5'- gUCGGAgGGUc-CGcGCgucGGCCUCUGg -3'
miRNA:   3'- gGGCCUgCCAaaGC-CGaa-UCGGAGAC- -5'
1637 5' -55.1 NC_001347.2 + 59076 0.66 0.97716
Target:  5'- -gCGcGGCGGUUUUGGUggcgcGGCCUCc- -3'
miRNA:   3'- ggGC-CUGCCAAAGCCGaa---UCGGAGac -5'
1637 5' -55.1 NC_001347.2 + 118899 0.66 0.97716
Target:  5'- gCCCGGACGGca-UGGCUUAcCCg--- -3'
miRNA:   3'- -GGGCCUGCCaaaGCCGAAUcGGagac -5'
1637 5' -55.1 NC_001347.2 + 207164 0.66 0.972134
Target:  5'- aUCCGGGCGGUcUCGGauauagcgAGCC-Ca- -3'
miRNA:   3'- -GGGCCUGCCAaAGCCgaa-----UCGGaGac -5'
1637 5' -55.1 NC_001347.2 + 37059 0.66 0.972134
Target:  5'- gCCgCGGA-GGUgcuggCGGCcgUGGCCUgUGg -3'
miRNA:   3'- -GG-GCCUgCCAaa---GCCGa-AUCGGAgAC- -5'
1637 5' -55.1 NC_001347.2 + 101139 0.66 0.971863
Target:  5'- gCCUGGAaugGGUUUauuuuuugaccagCGGCUUGGCCg--- -3'
miRNA:   3'- -GGGCCUg--CCAAA-------------GCCGAAUCGGagac -5'
1637 5' -55.1 NC_001347.2 + 138692 0.66 0.969342
Target:  5'- uCgCGGGCGGgugcgUCGGCU-AGCggUCUGg -3'
miRNA:   3'- -GgGCCUGCCaa---AGCCGAaUCGg-AGAC- -5'
1637 5' -55.1 NC_001347.2 + 166412 0.67 0.958367
Target:  5'- aCCGuGCGGUgacccuuggcgugUCGGCUUAcuuCCUCUGu -3'
miRNA:   3'- gGGCcUGCCAa------------AGCCGAAUc--GGAGAC- -5'
1637 5' -55.1 NC_001347.2 + 56087 0.68 0.933482
Target:  5'- uUCCGGAcaugggcucuucucCGGUagCGGCggAGCUUCUa -3'
miRNA:   3'- -GGGCCU--------------GCCAaaGCCGaaUCGGAGAc -5'
1637 5' -55.1 NC_001347.2 + 226752 0.71 0.821957
Target:  5'- cCCCGGGuCGGcgUCGGCau-GCCgCUGa -3'
miRNA:   3'- -GGGCCU-GCCaaAGCCGaauCGGaGAC- -5'
1637 5' -55.1 NC_001347.2 + 136090 0.72 0.750962
Target:  5'- cCCgCGGACGGac-CGGCgccgGGCCUCg- -3'
miRNA:   3'- -GG-GCCUGCCaaaGCCGaa--UCGGAGac -5'
1637 5' -55.1 NC_001347.2 + 132297 1.11 0.004382
Target:  5'- cCCCGGACGGUUUCGGCUUAGCCUCUGg -3'
miRNA:   3'- -GGGCCUGCCAAAGCCGAAUCGGAGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.