miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
16370	3'	-59.8	NC_004084.1	+	2585	0.66	0.495406
	Target:  5'- cCGGaGGAguGGGCCGACUGGacuUCAGu -3' miRNA:   3'- aGCC-CCUacCCCGGCUGGCUgu-AGUU- -5'
16370	3'	-59.8	NC_004084.1	+	15045	0.66	0.485431
	Target:  5'- aUCGGGGAacucgaUGaGGCUG-CCGAUAUCu- -3' miRNA:   3'- -AGCCCCU------ACcCCGGCuGGCUGUAGuu -5'
16370	3'	-59.8	NC_004084.1	+	46959	0.66	0.485431
	Target:  5'- cCGGGGcGUGGcGGCa-GCCGACG-CAAa -3' miRNA:   3'- aGCCCC-UACC-CCGgcUGGCUGUaGUU- -5'
16370	3'	-59.8	NC_004084.1	+	36498	0.66	0.456105
	Target:  5'- cCGGGacuacUGGGGCCGAUCGAaacgaGUCc- -3' miRNA:   3'- aGCCCcu---ACCCCGGCUGGCUg----UAGuu -5'
16370	3'	-59.8	NC_004084.1	+	36732	0.67	0.437092
	Target:  5'- aCGGGGAUcGGcGGC--AUCGACGUCGGg -3' miRNA:   3'- aGCCCCUA-CC-CCGgcUGGCUGUAGUU- -5'
16370	3'	-59.8	NC_004084.1	+	31163	0.67	0.437092
	Target:  5'- uUCGaGGGAcgcgGuGGGCCGGaCGACGUCu- -3' miRNA:   3'- -AGC-CCCUa---C-CCCGGCUgGCUGUAGuu -5'
16370	3'	-59.8	NC_004084.1	+	7512	0.67	0.436154
	Target:  5'- aCGGGGAgacugcgcccgagUGGGugcaGCCGAUccaggaCGGCAUCGAg -3' miRNA:   3'- aGCCCCU-------------ACCC----CGGCUG------GCUGUAGUU- -5'
16370	3'	-59.8	NC_004084.1	+	20720	0.67	0.418543
	Target:  5'- uUCGGGGAucccguugcUGGuGUCGA-CGACGUCGAa -3' miRNA:   3'- -AGCCCCU---------ACCcCGGCUgGCUGUAGUU- -5'
16370	3'	-59.8	NC_004084.1	+	47754	0.67	0.399591
	Target:  5'- gUUGGGGAuccggcucgccagUGGGGgCGucGCCGACcUCGAc -3' miRNA:   3'- -AGCCCCU-------------ACCCCgGC--UGGCUGuAGUU- -5'
16370	3'	-59.8	NC_004084.1	+	1899	1.06	0.000607
	Target:  5'- gUCGGGGAUGGGGCCGACCGACAUCAAg -3' miRNA:   3'- -AGCCCCUACCCCGGCUGGCUGUAGUU- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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