Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16370 | 3' | -59.8 | NC_004084.1 | + | 1899 | 1.06 | 0.000607 |
Target: 5'- gUCGGGGAUGGGGCCGACCGACAUCAAg -3' miRNA: 3'- -AGCCCCUACCCCGGCUGGCUGUAGUU- -5' |
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16370 | 3' | -59.8 | NC_004084.1 | + | 2585 | 0.66 | 0.495406 |
Target: 5'- cCGGaGGAguGGGCCGACUGGacuUCAGu -3' miRNA: 3'- aGCC-CCUacCCCGGCUGGCUgu-AGUU- -5' |
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16370 | 3' | -59.8 | NC_004084.1 | + | 7512 | 0.67 | 0.436154 |
Target: 5'- aCGGGGAgacugcgcccgagUGGGugcaGCCGAUccaggaCGGCAUCGAg -3' miRNA: 3'- aGCCCCU-------------ACCC----CGGCUG------GCUGUAGUU- -5' |
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16370 | 3' | -59.8 | NC_004084.1 | + | 15045 | 0.66 | 0.485431 |
Target: 5'- aUCGGGGAacucgaUGaGGCUG-CCGAUAUCu- -3' miRNA: 3'- -AGCCCCU------ACcCCGGCuGGCUGUAGuu -5' |
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16370 | 3' | -59.8 | NC_004084.1 | + | 20720 | 0.67 | 0.418543 |
Target: 5'- uUCGGGGAucccguugcUGGuGUCGA-CGACGUCGAa -3' miRNA: 3'- -AGCCCCU---------ACCcCGGCUgGCUGUAGUU- -5' |
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16370 | 3' | -59.8 | NC_004084.1 | + | 31163 | 0.67 | 0.437092 |
Target: 5'- uUCGaGGGAcgcgGuGGGCCGGaCGACGUCu- -3' miRNA: 3'- -AGC-CCCUa---C-CCCGGCUgGCUGUAGuu -5' |
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16370 | 3' | -59.8 | NC_004084.1 | + | 36498 | 0.66 | 0.456105 |
Target: 5'- cCGGGacuacUGGGGCCGAUCGAaacgaGUCc- -3' miRNA: 3'- aGCCCcu---ACCCCGGCUGGCUg----UAGuu -5' |
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16370 | 3' | -59.8 | NC_004084.1 | + | 36732 | 0.67 | 0.437092 |
Target: 5'- aCGGGGAUcGGcGGC--AUCGACGUCGGg -3' miRNA: 3'- aGCCCCUA-CC-CCGgcUGGCUGUAGUU- -5' |
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16370 | 3' | -59.8 | NC_004084.1 | + | 46959 | 0.66 | 0.485431 |
Target: 5'- cCGGGGcGUGGcGGCa-GCCGACG-CAAa -3' miRNA: 3'- aGCCCC-UACC-CCGgcUGGCUGUaGUU- -5' |
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16370 | 3' | -59.8 | NC_004084.1 | + | 47754 | 0.67 | 0.399591 |
Target: 5'- gUUGGGGAuccggcucgccagUGGGGgCGucGCCGACcUCGAc -3' miRNA: 3'- -AGCCCCU-------------ACCCCgGC--UGGCUGuAGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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