miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16370 5' -55.8 NC_004084.1 + 2114 0.66 0.780319
Target:  5'- cGUCGAGaACGgacgcauccucuuccACCGaGGUCaccagACGACCg -3'
miRNA:   3'- cCAGCUCaUGC---------------UGGC-CCGGa----UGCUGG- -5'
16370 5' -55.8 NC_004084.1 + 52371 0.66 0.773517
Target:  5'- aGGUCGA-UGCGauuccgcgaccagcGCCGGGguuCCUgGCGAUCg -3'
miRNA:   3'- -CCAGCUcAUGC--------------UGGCCC---GGA-UGCUGG- -5'
16370 5' -55.8 NC_004084.1 + 30714 0.66 0.766647
Target:  5'- cGUCGAGgagcUGAUCgauGGGCUguuCGACCg -3'
miRNA:   3'- cCAGCUCau--GCUGG---CCCGGau-GCUGG- -5'
16370 5' -55.8 NC_004084.1 + 42259 0.66 0.766647
Target:  5'- uGGUCGAGUGauGCuCGaGCagcGCGACCa -3'
miRNA:   3'- -CCAGCUCAUgcUG-GCcCGga-UGCUGG- -5'
16370 5' -55.8 NC_004084.1 + 22522 0.66 0.756724
Target:  5'- -cUCGAcgACGAUCGccuccGGCCgaagACGACCg -3'
miRNA:   3'- ccAGCUcaUGCUGGC-----CCGGa---UGCUGG- -5'
16370 5' -55.8 NC_004084.1 + 41896 0.66 0.746681
Target:  5'- aGGUCcacgACGACCGcGGCgcGCGAUCg -3'
miRNA:   3'- -CCAGcucaUGCUGGC-CCGgaUGCUGG- -5'
16370 5' -55.8 NC_004084.1 + 47465 0.66 0.736528
Target:  5'- uGGUCGAuGU-CGACCGGGaCU--GGCUg -3'
miRNA:   3'- -CCAGCU-CAuGCUGGCCCgGAugCUGG- -5'
16370 5' -55.8 NC_004084.1 + 5179 0.66 0.736528
Target:  5'- aGUCGAucgACGACUGGGUagacgagGCGGCa -3'
miRNA:   3'- cCAGCUca-UGCUGGCCCGga-----UGCUGg -5'
16370 5' -55.8 NC_004084.1 + 28784 0.66 0.736528
Target:  5'- cGGUCGucgACGuCCGGaGCCgACaGCCa -3'
miRNA:   3'- -CCAGCucaUGCuGGCC-CGGaUGcUGG- -5'
16370 5' -55.8 NC_004084.1 + 35567 0.67 0.726276
Target:  5'- uGGUCGGGaucucgGCGAUCGccCCU-CGACCu -3'
miRNA:   3'- -CCAGCUCa-----UGCUGGCccGGAuGCUGG- -5'
16370 5' -55.8 NC_004084.1 + 39633 0.67 0.726276
Target:  5'- cGGUCGAGU-CGAUCGcgcuGGCCaucACGAg- -3'
miRNA:   3'- -CCAGCUCAuGCUGGC----CCGGa--UGCUgg -5'
16370 5' -55.8 NC_004084.1 + 42035 0.67 0.715936
Target:  5'- cGUCGuuc-CGGCaGGGCCUcgagagACGACCa -3'
miRNA:   3'- cCAGCucauGCUGgCCCGGA------UGCUGG- -5'
16370 5' -55.8 NC_004084.1 + 41650 0.67 0.715936
Target:  5'- cGUCGAGUucaaACG-CCGGGCgaACaacgucaucgaGGCCg -3'
miRNA:   3'- cCAGCUCA----UGCuGGCCCGgaUG-----------CUGG- -5'
16370 5' -55.8 NC_004084.1 + 35478 0.67 0.715936
Target:  5'- aGGUCGAGgcgGCGAUC--GCCgagauccCGACCa -3'
miRNA:   3'- -CCAGCUCa--UGCUGGccCGGau-----GCUGG- -5'
16370 5' -55.8 NC_004084.1 + 51452 0.67 0.715936
Target:  5'- uGG-CGAGggccgcgGCGGCuguaCGGGCg-ACGACCg -3'
miRNA:   3'- -CCaGCUCa------UGCUG----GCCCGgaUGCUGG- -5'
16370 5' -55.8 NC_004084.1 + 44256 0.67 0.715936
Target:  5'- --aCGGG-ACGACC-GGCCUucACGACg -3'
miRNA:   3'- ccaGCUCaUGCUGGcCCGGA--UGCUGg -5'
16370 5' -55.8 NC_004084.1 + 8245 0.67 0.695032
Target:  5'- cGUCGAG-ACGAUCGacGCCgcugACGACa -3'
miRNA:   3'- cCAGCUCaUGCUGGCc-CGGa---UGCUGg -5'
16370 5' -55.8 NC_004084.1 + 40216 0.67 0.695032
Target:  5'- cGUUGAGgcCGAUCaGGCCaccguCGGCCu -3'
miRNA:   3'- cCAGCUCauGCUGGcCCGGau---GCUGG- -5'
16370 5' -55.8 NC_004084.1 + 51233 0.67 0.68449
Target:  5'- cGUCGAGcagcucgACGuCCGGaucgCUGCGACCg -3'
miRNA:   3'- cCAGCUCa------UGCuGGCCcg--GAUGCUGG- -5'
16370 5' -55.8 NC_004084.1 + 44205 0.67 0.6739
Target:  5'- cGGUUGAGgaccucgACGAgCGgauGGCCgACGGCUg -3'
miRNA:   3'- -CCAGCUCa------UGCUgGC---CCGGaUGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.