miRNA display CGI


Results 1 - 20 of 22 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16371 3' -54.9 NC_004084.1 + 5651 0.66 0.757891
Target:  5'- gGCUgGCgaGCGGAUCCagaaagccaccgUCGaCGAGAc -3'
miRNA:   3'- -CGAgCGgaCGCUUAGG------------AGCaGCUCUu -5'
16371 3' -54.9 NC_004084.1 + 32077 0.66 0.747521
Target:  5'- cGCguggC-CCUGCGGAUCCagGUCGAu-- -3'
miRNA:   3'- -CGa---GcGGACGCUUAGGagCAGCUcuu -5'
16371 3' -54.9 NC_004084.1 + 12236 0.66 0.747521
Target:  5'- cCUCGUgUGCGAcAUCCaucgcuUCGUCGAcGGAg -3'
miRNA:   3'- cGAGCGgACGCU-UAGG------AGCAGCU-CUU- -5'
16371 3' -54.9 NC_004084.1 + 37229 0.66 0.747521
Target:  5'- aGCUCGUC-GCGAugAUCaCggaacgaccgCGUCGAGAAg -3'
miRNA:   3'- -CGAGCGGaCGCU--UAG-Ga---------GCAGCUCUU- -5'
16371 3' -54.9 NC_004084.1 + 374 0.66 0.726439
Target:  5'- uCUCGUCgGCG-GUCgUCGUCGAGc- -3'
miRNA:   3'- cGAGCGGaCGCuUAGgAGCAGCUCuu -5'
16371 3' -54.9 NC_004084.1 + 4173 0.66 0.715751
Target:  5'- cCUCGCCgacgGCGcuGAUCgCUCcgacGUCGAGAu -3'
miRNA:   3'- cGAGCGGa---CGC--UUAG-GAG----CAGCUCUu -5'
16371 3' -54.9 NC_004084.1 + 51334 0.67 0.683233
Target:  5'- aGUgCGCCcGCGAgAUCUUCGUCGAcGGGu -3'
miRNA:   3'- -CGaGCGGaCGCU-UAGGAGCAGCU-CUU- -5'
16371 3' -54.9 NC_004084.1 + 22605 0.67 0.683233
Target:  5'- cUUCgGCCggagGCG-AUCgUCGUCGAGGAu -3'
miRNA:   3'- cGAG-CGGa---CGCuUAGgAGCAGCUCUU- -5'
16371 3' -54.9 NC_004084.1 + 7241 0.67 0.682139
Target:  5'- gGCuUCGUCagcgGCGAacgcuguGUCgUCGUCGAGGAu -3'
miRNA:   3'- -CG-AGCGGa---CGCU-------UAGgAGCAGCUCUU- -5'
16371 3' -54.9 NC_004084.1 + 16791 0.68 0.595131
Target:  5'- cGUUCGCCgcgGCGuugaauuUCCUCGaggacccaUCGAGAu -3'
miRNA:   3'- -CGAGCGGa--CGCuu-----AGGAGC--------AGCUCUu -5'
16371 3' -54.9 NC_004084.1 + 19654 0.69 0.573231
Target:  5'- cCUCGUgguCUGgGAcgucGUCCUCGUCGAGc- -3'
miRNA:   3'- cGAGCG---GACgCU----UAGGAGCAGCUCuu -5'
16371 3' -54.9 NC_004084.1 + 43121 0.69 0.562349
Target:  5'- uGCUCGCUccuucacGCGggUCCgcuugcgucUCGUUGGGGAa -3'
miRNA:   3'- -CGAGCGGa------CGCuuAGG---------AGCAGCUCUU- -5'
16371 3' -54.9 NC_004084.1 + 31110 0.69 0.551524
Target:  5'- aCUCGCCUgGCGAAUgCUacgCGUgGAGAc -3'
miRNA:   3'- cGAGCGGA-CGCUUAgGA---GCAgCUCUu -5'
16371 3' -54.9 NC_004084.1 + 36688 0.69 0.540763
Target:  5'- ---gGUUcGUGggUCCUCGUCGGGAAg -3'
miRNA:   3'- cgagCGGaCGCuuAGGAGCAGCUCUU- -5'
16371 3' -54.9 NC_004084.1 + 57487 0.7 0.519462
Target:  5'- aGCUCGCCgGCGAcgUCgacgCGaUCGGGGg -3'
miRNA:   3'- -CGAGCGGaCGCUuaGGa---GC-AGCUCUu -5'
16371 3' -54.9 NC_004084.1 + 1603 0.7 0.497461
Target:  5'- -aUCGUCgacaGCGGuguagagGUCCUCGUCGGGAc -3'
miRNA:   3'- cgAGCGGa---CGCU-------UAGGAGCAGCUCUu -5'
16371 3' -54.9 NC_004084.1 + 52652 0.7 0.477924
Target:  5'- cCUCGgCUGCGGcgagacggagAUCgUCGUCGAGGc -3'
miRNA:   3'- cGAGCgGACGCU----------UAGgAGCAGCUCUu -5'
16371 3' -54.9 NC_004084.1 + 57404 0.71 0.438089
Target:  5'- cUUCGCCgcuuuguagGCGucccCCUCGUCGAGGAg -3'
miRNA:   3'- cGAGCGGa--------CGCuua-GGAGCAGCUCUU- -5'
16371 3' -54.9 NC_004084.1 + 50688 0.72 0.400226
Target:  5'- aGCUCGCCaGCGAggcgaaggacGUCCUCGagGGGu- -3'
miRNA:   3'- -CGAGCGGaCGCU----------UAGGAGCagCUCuu -5'
16371 3' -54.9 NC_004084.1 + 51038 0.72 0.391091
Target:  5'- gGCUCGUUU-CG--UCCUCGUCGAGGAg -3'
miRNA:   3'- -CGAGCGGAcGCuuAGGAGCAGCUCUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.