miRNA display CGI


Results 1 - 20 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16371 5' -54.6 NC_004084.1 + 28788 0.66 0.810217
Target:  5'- ---cCCGCgcggccguuCGAGGagaUCGuCCGGGCGACCg -3'
miRNA:   3'- agaaGGUG---------GCUCC---AGU-GGUCUGCUGG- -5'
16371 5' -54.6 NC_004084.1 + 21964 0.66 0.800795
Target:  5'- gUC-UCCGCCGAGaUCGacacggugCAGACGGCg -3'
miRNA:   3'- -AGaAGGUGGCUCcAGUg-------GUCUGCUGg -5'
16371 5' -54.6 NC_004084.1 + 52348 0.66 0.800795
Target:  5'- ----gCGCCGGGGUU-CCuGGCGAUCg -3'
miRNA:   3'- agaagGUGGCUCCAGuGGuCUGCUGG- -5'
16371 5' -54.6 NC_004084.1 + 36083 0.66 0.799843
Target:  5'- ---aCCGCgaCGAGGUCGCCgucuccuacgaguGGcACGGCCc -3'
miRNA:   3'- agaaGGUG--GCUCCAGUGG-------------UC-UGCUGG- -5'
16371 5' -54.6 NC_004084.1 + 31482 0.66 0.7912
Target:  5'- gCUUCgACCu-GGUCugguuucaACCAGugGACUu -3'
miRNA:   3'- aGAAGgUGGcuCCAG--------UGGUCugCUGG- -5'
16371 5' -54.6 NC_004084.1 + 57497 0.66 0.7912
Target:  5'- --gUCCACCucGAGcUCGCCGG-CGACg -3'
miRNA:   3'- agaAGGUGG--CUCcAGUGGUCuGCUGg -5'
16371 5' -54.6 NC_004084.1 + 83 0.66 0.781443
Target:  5'- gCUUCC-CC-AGGcCACCGGGCGuCg -3'
miRNA:   3'- aGAAGGuGGcUCCaGUGGUCUGCuGg -5'
16371 5' -54.6 NC_004084.1 + 12259 0.66 0.781443
Target:  5'- ---gCCGCUGGGGacgUACCcuGCGACCu -3'
miRNA:   3'- agaaGGUGGCUCCa--GUGGucUGCUGG- -5'
16371 5' -54.6 NC_004084.1 + 12166 0.66 0.771534
Target:  5'- --gUCgCACaCGAGGUCGcaggguacguccCCAGcgGCGACCu -3'
miRNA:   3'- agaAG-GUG-GCUCCAGU------------GGUC--UGCUGG- -5'
16371 5' -54.6 NC_004084.1 + 6346 0.66 0.771534
Target:  5'- ---cCCGCCGGGG--GCCAGugcucaucguCGACCg -3'
miRNA:   3'- agaaGGUGGCUCCagUGGUCu---------GCUGG- -5'
16371 5' -54.6 NC_004084.1 + 31710 0.67 0.741008
Target:  5'- cCUUCCA-CGAGGaaaaaUCGCaAGACGGCg -3'
miRNA:   3'- aGAAGGUgGCUCC-----AGUGgUCUGCUGg -5'
16371 5' -54.6 NC_004084.1 + 34710 0.67 0.720102
Target:  5'- gUCgUCCuuuCCGGGcGUCGCCGGuucGCGAUg -3'
miRNA:   3'- -AGaAGGu--GGCUC-CAGUGGUC---UGCUGg -5'
16371 5' -54.6 NC_004084.1 + 9944 0.67 0.720102
Target:  5'- cUCUUCCGCCGGGcuccCGCguGAgccgcccucgcCGACCu -3'
miRNA:   3'- -AGAAGGUGGCUCca--GUGguCU-----------GCUGG- -5'
16371 5' -54.6 NC_004084.1 + 8457 0.67 0.709515
Target:  5'- gCUUCCccaucauaggAUCGGGGcugUgGCCGGACGACa -3'
miRNA:   3'- aGAAGG----------UGGCUCC---AgUGGUCUGCUGg -5'
16371 5' -54.6 NC_004084.1 + 27836 0.68 0.698854
Target:  5'- --gUCCG-CGAGGUCA-CGGACGAgCu -3'
miRNA:   3'- agaAGGUgGCUCCAGUgGUCUGCUgG- -5'
16371 5' -54.6 NC_004084.1 + 22381 0.68 0.697784
Target:  5'- aUCaUCCAg-GAGGUCgaacgcuACCGGACGAUCa -3'
miRNA:   3'- -AGaAGGUggCUCCAG-------UGGUCUGCUGG- -5'
16371 5' -54.6 NC_004084.1 + 44438 0.68 0.688129
Target:  5'- gUCgcUCGCCGuuGUCACC--GCGACCg -3'
miRNA:   3'- -AGaaGGUGGCucCAGUGGucUGCUGG- -5'
16371 5' -54.6 NC_004084.1 + 28398 0.68 0.687054
Target:  5'- aUCUUCgcgucgaugcgaaCGCUGAcgucGUCACCAG-CGACCa -3'
miRNA:   3'- -AGAAG-------------GUGGCUc---CAGUGGUCuGCUGG- -5'
16371 5' -54.6 NC_004084.1 + 22549 0.68 0.666533
Target:  5'- ---gUCGCCGGGGUCGgCGGccgUGACCa -3'
miRNA:   3'- agaaGGUGGCUCCAGUgGUCu--GCUGG- -5'
16371 5' -54.6 NC_004084.1 + 11895 0.68 0.655682
Target:  5'- aCUUCgauGCCGAGaucGUCAUCAacucGGCGACCg -3'
miRNA:   3'- aGAAGg--UGGCUC---CAGUGGU----CUGCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.