Results 41 - 45 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16371 | 5' | -54.6 | NC_004084.1 | + | 28788 | 0.66 | 0.810217 |
Target: 5'- ---cCCGCgcggccguuCGAGGagaUCGuCCGGGCGACCg -3' miRNA: 3'- agaaGGUG---------GCUCC---AGU-GGUCUGCUGG- -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 52348 | 0.66 | 0.800795 |
Target: 5'- ----gCGCCGGGGUU-CCuGGCGAUCg -3' miRNA: 3'- agaagGUGGCUCCAGuGGuCUGCUGG- -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 57497 | 0.66 | 0.7912 |
Target: 5'- --gUCCACCucGAGcUCGCCGG-CGACg -3' miRNA: 3'- agaAGGUGG--CUCcAGUGGUCuGCUGg -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 83 | 0.66 | 0.781443 |
Target: 5'- gCUUCC-CC-AGGcCACCGGGCGuCg -3' miRNA: 3'- aGAAGGuGGcUCCaGUGGUCUGCuGg -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 6346 | 0.66 | 0.771534 |
Target: 5'- ---cCCGCCGGGG--GCCAGugcucaucguCGACCg -3' miRNA: 3'- agaaGGUGGCUCCagUGGUCu---------GCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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