Results 41 - 45 of 45 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16371 | 5' | -54.6 | NC_004084.1 | + | 57497 | 0.66 | 0.7912 |
Target: 5'- --gUCCACCucGAGcUCGCCGG-CGACg -3' miRNA: 3'- agaAGGUGG--CUCcAGUGGUCuGCUGg -5' |
|||||||
16371 | 5' | -54.6 | NC_004084.1 | + | 36083 | 0.66 | 0.799843 |
Target: 5'- ---aCCGCgaCGAGGUCGCCgucuccuacgaguGGcACGGCCc -3' miRNA: 3'- agaaGGUG--GCUCCAGUGG-------------UC-UGCUGG- -5' |
|||||||
16371 | 5' | -54.6 | NC_004084.1 | + | 52348 | 0.66 | 0.800795 |
Target: 5'- ----gCGCCGGGGUU-CCuGGCGAUCg -3' miRNA: 3'- agaagGUGGCUCCAGuGGuCUGCUGG- -5' |
|||||||
16371 | 5' | -54.6 | NC_004084.1 | + | 21964 | 0.66 | 0.800795 |
Target: 5'- gUC-UCCGCCGAGaUCGacacggugCAGACGGCg -3' miRNA: 3'- -AGaAGGUGGCUCcAGUg-------GUCUGCUGg -5' |
|||||||
16371 | 5' | -54.6 | NC_004084.1 | + | 28788 | 0.66 | 0.810217 |
Target: 5'- ---cCCGCgcggccguuCGAGGagaUCGuCCGGGCGACCg -3' miRNA: 3'- agaaGGUG---------GCUCC---AGU-GGUCUGCUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home