miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16371 5' -54.6 NC_004084.1 + 5210 0.69 0.632839
Target:  5'- gUCgccaCGCCGAGGUUguaucgacggucgGCCAGcugGCGGCCc -3'
miRNA:   3'- -AGaag-GUGGCUCCAG-------------UGGUC---UGCUGG- -5'
16371 5' -54.6 NC_004084.1 + 28673 0.69 0.612166
Target:  5'- aUCgUCuCGCCGGuggucucuccGGUCGcCCGGACGAUCu -3'
miRNA:   3'- -AGaAG-GUGGCU----------CCAGU-GGUCUGCUGG- -5'
16371 5' -54.6 NC_004084.1 + 21289 0.69 0.612166
Target:  5'- aUCUUCCGCCGcgugauGGaaACCAG-CGGCg -3'
miRNA:   3'- -AGAAGGUGGCu-----CCagUGGUCuGCUGg -5'
16371 5' -54.6 NC_004084.1 + 42285 0.69 0.605647
Target:  5'- ---aCCACCGcGGUCACCcguucacgaucggcGACGAUCg -3'
miRNA:   3'- agaaGGUGGCuCCAGUGGu-------------CUGCUGG- -5'
16371 5' -54.6 NC_004084.1 + 520 0.69 0.601306
Target:  5'- gUCcUCCGCCgucucGAGGUCGCCguAGACG-CUc -3'
miRNA:   3'- -AGaAGGUGG-----CUCCAGUGG--UCUGCuGG- -5'
16371 5' -54.6 NC_004084.1 + 42673 0.69 0.598052
Target:  5'- --gUCCucCCGAGcGUCAUCAucacgcucacgaacGACGACCa -3'
miRNA:   3'- agaAGGu-GGCUC-CAGUGGU--------------CUGCUGG- -5'
16371 5' -54.6 NC_004084.1 + 48173 0.69 0.590472
Target:  5'- ----aCGCCGAccgcgacUCACCAGGCGACCu -3'
miRNA:   3'- agaagGUGGCUcc-----AGUGGUCUGCUGG- -5'
16371 5' -54.6 NC_004084.1 + 54366 0.69 0.590472
Target:  5'- gUCUUCgGCCaGcAGaaugcUUACCAGACGGCCg -3'
miRNA:   3'- -AGAAGgUGG-C-UCc----AGUGGUCUGCUGG- -5'
16371 5' -54.6 NC_004084.1 + 28691 0.69 0.590472
Target:  5'- cCggCCGCuaCGAGaUCACCgaAGACGACCa -3'
miRNA:   3'- aGaaGGUG--GCUCcAGUGG--UCUGCUGG- -5'
16371 5' -54.6 NC_004084.1 + 3929 0.7 0.579672
Target:  5'- ----aCACCGAGGUU-CCGGugGAgCCg -3'
miRNA:   3'- agaagGUGGCUCCAGuGGUCugCU-GG- -5'
16371 5' -54.6 NC_004084.1 + 35618 0.7 0.568914
Target:  5'- aCUcgCCGCCGAGGUCcucgaucacGCgCAGgaugucccacucGCGACCg -3'
miRNA:   3'- aGAa-GGUGGCUCCAG---------UG-GUC------------UGCUGG- -5'
16371 5' -54.6 NC_004084.1 + 44588 0.7 0.558207
Target:  5'- gCUgCCACgcaGAGGUCAUCgccgAGugGGCCg -3'
miRNA:   3'- aGAaGGUGg--CUCCAGUGG----UCugCUGG- -5'
16371 5' -54.6 NC_004084.1 + 37465 0.7 0.547558
Target:  5'- --gUCUGCCGAGuucGUCGaagUCAGGCGGCCa -3'
miRNA:   3'- agaAGGUGGCUC---CAGU---GGUCUGCUGG- -5'
16371 5' -54.6 NC_004084.1 + 8657 0.7 0.547558
Target:  5'- --gUCCucGCCGAGGgu-CUGGGCGACCc -3'
miRNA:   3'- agaAGG--UGGCUCCaguGGUCUGCUGG- -5'
16371 5' -54.6 NC_004084.1 + 41604 0.7 0.536974
Target:  5'- cUCUUCCG-CGAGucGUUcCCAGGCGAUCg -3'
miRNA:   3'- -AGAAGGUgGCUC--CAGuGGUCUGCUGG- -5'
16371 5' -54.6 NC_004084.1 + 20597 0.71 0.516027
Target:  5'- aUCcUCCaggagggccagACCGAGGUCACCGcauCGAUCg -3'
miRNA:   3'- -AGaAGG-----------UGGCUCCAGUGGUcu-GCUGG- -5'
16371 5' -54.6 NC_004084.1 + 17348 0.71 0.505677
Target:  5'- --cUCCACCGAGGgcaUCGCCGacugcacCGGCCg -3'
miRNA:   3'- agaAGGUGGCUCC---AGUGGUcu-----GCUGG- -5'
16371 5' -54.6 NC_004084.1 + 41444 0.71 0.495418
Target:  5'- gCUUCUACCGA-GUCGuCCAGGCGcUCg -3'
miRNA:   3'- aGAAGGUGGCUcCAGU-GGUCUGCuGG- -5'
16371 5' -54.6 NC_004084.1 + 17966 0.71 0.485253
Target:  5'- gUCUUCagacgaGCuCGAaaGGUCACCAGAguccgauuCGACCg -3'
miRNA:   3'- -AGAAGg-----UG-GCU--CCAGUGGUCU--------GCUGG- -5'
16371 5' -54.6 NC_004084.1 + 40284 0.71 0.473189
Target:  5'- cUCgUCCAgcucgaggugaaCGAGGUCGCCGGAguUGGCCa -3'
miRNA:   3'- -AGaAGGUg-----------GCUCCAGUGGUCU--GCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.