Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16371 | 5' | -54.6 | NC_004084.1 | + | 27836 | 0.68 | 0.698854 |
Target: 5'- --gUCCG-CGAGGUCA-CGGACGAgCu -3' miRNA: 3'- agaAGGUgGCUCCAGUgGUCUGCUgG- -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 28398 | 0.68 | 0.687054 |
Target: 5'- aUCUUCgcgucgaugcgaaCGCUGAcgucGUCACCAG-CGACCa -3' miRNA: 3'- -AGAAG-------------GUGGCUc---CAGUGGUCuGCUGG- -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 28673 | 0.69 | 0.612166 |
Target: 5'- aUCgUCuCGCCGGuggucucuccGGUCGcCCGGACGAUCu -3' miRNA: 3'- -AGaAG-GUGGCU----------CCAGU-GGUCUGCUGG- -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 28691 | 0.69 | 0.590472 |
Target: 5'- cCggCCGCuaCGAGaUCACCgaAGACGACCa -3' miRNA: 3'- aGaaGGUG--GCUCcAGUGG--UCUGCUGG- -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 28788 | 0.66 | 0.810217 |
Target: 5'- ---cCCGCgcggccguuCGAGGagaUCGuCCGGGCGACCg -3' miRNA: 3'- agaaGGUG---------GCUCC---AGU-GGUCUGCUGG- -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 31482 | 0.66 | 0.7912 |
Target: 5'- gCUUCgACCu-GGUCugguuucaACCAGugGACUu -3' miRNA: 3'- aGAAGgUGGcuCCAG--------UGGUCugCUGG- -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 31710 | 0.67 | 0.741008 |
Target: 5'- cCUUCCA-CGAGGaaaaaUCGCaAGACGGCg -3' miRNA: 3'- aGAAGGUgGCUCC-----AGUGgUCUGCUGg -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 34710 | 0.67 | 0.720102 |
Target: 5'- gUCgUCCuuuCCGGGcGUCGCCGGuucGCGAUg -3' miRNA: 3'- -AGaAGGu--GGCUC-CAGUGGUC---UGCUGg -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 35323 | 0.73 | 0.417158 |
Target: 5'- gCUggCUAuCCGAGGUCGCC-GACGuCCa -3' miRNA: 3'- aGAa-GGU-GGCUCCAGUGGuCUGCuGG- -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 35618 | 0.7 | 0.568914 |
Target: 5'- aCUcgCCGCCGAGGUCcucgaucacGCgCAGgaugucccacucGCGACCg -3' miRNA: 3'- aGAa-GGUGGCUCCAG---------UG-GUC------------UGCUGG- -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 36083 | 0.66 | 0.799843 |
Target: 5'- ---aCCGCgaCGAGGUCGCCgucuccuacgaguGGcACGGCCc -3' miRNA: 3'- agaaGGUG--GCUCCAGUGG-------------UC-UGCUGG- -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 37465 | 0.7 | 0.547558 |
Target: 5'- --gUCUGCCGAGuucGUCGaagUCAGGCGGCCa -3' miRNA: 3'- agaAGGUGGCUC---CAGU---GGUCUGCUGG- -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 40284 | 0.71 | 0.473189 |
Target: 5'- cUCgUCCAgcucgaggugaaCGAGGUCGCCGGAguUGGCCa -3' miRNA: 3'- -AGaAGGUg-----------GCUCCAGUGGUCU--GCUGG- -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 41444 | 0.71 | 0.495418 |
Target: 5'- gCUUCUACCGA-GUCGuCCAGGCGcUCg -3' miRNA: 3'- aGAAGGUGGCUcCAGU-GGUCUGCuGG- -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 41604 | 0.7 | 0.536974 |
Target: 5'- cUCUUCCG-CGAGucGUUcCCAGGCGAUCg -3' miRNA: 3'- -AGAAGGUgGCUC--CAGuGGUCUGCUGG- -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 42285 | 0.69 | 0.605647 |
Target: 5'- ---aCCACCGcGGUCACCcguucacgaucggcGACGAUCg -3' miRNA: 3'- agaaGGUGGCuCCAGUGGu-------------CUGCUGG- -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 42673 | 0.69 | 0.598052 |
Target: 5'- --gUCCucCCGAGcGUCAUCAucacgcucacgaacGACGACCa -3' miRNA: 3'- agaAGGu-GGCUC-CAGUGGU--------------CUGCUGG- -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 43311 | 0.76 | 0.264848 |
Target: 5'- gCUUCCACCGcuacGGUCACaccGACGACg -3' miRNA: 3'- aGAAGGUGGCu---CCAGUGgu-CUGCUGg -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 44438 | 0.68 | 0.688129 |
Target: 5'- gUCgcUCGCCGuuGUCACC--GCGACCg -3' miRNA: 3'- -AGaaGGUGGCucCAGUGGucUGCUGG- -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 44588 | 0.7 | 0.558207 |
Target: 5'- gCUgCCACgcaGAGGUCAUCgccgAGugGGCCg -3' miRNA: 3'- aGAaGGUGg--CUCCAGUGG----UCugCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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