Results 41 - 45 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16371 | 5' | -54.6 | NC_004084.1 | + | 3929 | 0.7 | 0.579672 |
Target: 5'- ----aCACCGAGGUU-CCGGugGAgCCg -3' miRNA: 3'- agaagGUGGCUCCAGuGGUCugCU-GG- -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 2133 | 1.13 | 0.00078 |
Target: 5'- cUCUUCCACCGAGGUCACCAGACGACCg -3' miRNA: 3'- -AGAAGGUGGCUCCAGUGGUCUGCUGG- -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 574 | 0.72 | 0.426531 |
Target: 5'- aUCUUCCcgGCCGAGGaacUCGagauGACGGCCg -3' miRNA: 3'- -AGAAGG--UGGCUCC---AGUggu-CUGCUGG- -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 520 | 0.69 | 0.601306 |
Target: 5'- gUCcUCCGCCgucucGAGGUCGCCguAGACG-CUc -3' miRNA: 3'- -AGaAGGUGG-----CUCCAGUGG--UCUGCuGG- -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 83 | 0.66 | 0.781443 |
Target: 5'- gCUUCC-CC-AGGcCACCGGGCGuCg -3' miRNA: 3'- aGAAGGuGGcUCCaGUGGUCUGCuGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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