miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16371 5' -54.6 NC_004084.1 + 12166 0.66 0.771534
Target:  5'- --gUCgCACaCGAGGUCGcaggguacguccCCAGcgGCGACCu -3'
miRNA:   3'- agaAG-GUG-GCUCCAGU------------GGUC--UGCUGG- -5'
16371 5' -54.6 NC_004084.1 + 21289 0.69 0.612166
Target:  5'- aUCUUCCGCCGcgugauGGaaACCAG-CGGCg -3'
miRNA:   3'- -AGAAGGUGGCu-----CCagUGGUCuGCUGg -5'
16371 5' -54.6 NC_004084.1 + 28673 0.69 0.612166
Target:  5'- aUCgUCuCGCCGGuggucucuccGGUCGcCCGGACGAUCu -3'
miRNA:   3'- -AGaAG-GUGGCU----------CCAGU-GGUCUGCUGG- -5'
16371 5' -54.6 NC_004084.1 + 11895 0.68 0.655682
Target:  5'- aCUUCgauGCCGAGaucGUCAUCAacucGGCGACCg -3'
miRNA:   3'- aGAAGg--UGGCUC---CAGUGGU----CUGCUGG- -5'
16371 5' -54.6 NC_004084.1 + 28398 0.68 0.687054
Target:  5'- aUCUUCgcgucgaugcgaaCGCUGAcgucGUCACCAG-CGACCa -3'
miRNA:   3'- -AGAAG-------------GUGGCUc---CAGUGGUCuGCUGG- -5'
16371 5' -54.6 NC_004084.1 + 22381 0.68 0.697784
Target:  5'- aUCaUCCAg-GAGGUCgaacgcuACCGGACGAUCa -3'
miRNA:   3'- -AGaAGGUggCUCCAG-------UGGUCUGCUGG- -5'
16371 5' -54.6 NC_004084.1 + 27836 0.68 0.698854
Target:  5'- --gUCCG-CGAGGUCA-CGGACGAgCu -3'
miRNA:   3'- agaAGGUgGCUCCAGUgGUCUGCUgG- -5'
16371 5' -54.6 NC_004084.1 + 8457 0.67 0.709515
Target:  5'- gCUUCCccaucauaggAUCGGGGcugUgGCCGGACGACa -3'
miRNA:   3'- aGAAGG----------UGGCUCC---AgUGGUCUGCUGg -5'
16371 5' -54.6 NC_004084.1 + 34710 0.67 0.720102
Target:  5'- gUCgUCCuuuCCGGGcGUCGCCGGuucGCGAUg -3'
miRNA:   3'- -AGaAGGu--GGCUC-CAGUGGUC---UGCUGg -5'
16371 5' -54.6 NC_004084.1 + 42285 0.69 0.605647
Target:  5'- ---aCCACCGcGGUCACCcguucacgaucggcGACGAUCg -3'
miRNA:   3'- agaaGGUGGCuCCAGUGGu-------------CUGCUGG- -5'
16371 5' -54.6 NC_004084.1 + 42673 0.69 0.598052
Target:  5'- --gUCCucCCGAGcGUCAUCAucacgcucacgaacGACGACCa -3'
miRNA:   3'- agaAGGu-GGCUC-CAGUGGU--------------CUGCUGG- -5'
16371 5' -54.6 NC_004084.1 + 48173 0.69 0.590472
Target:  5'- ----aCGCCGAccgcgacUCACCAGGCGACCu -3'
miRNA:   3'- agaagGUGGCUcc-----AGUGGUCUGCUGG- -5'
16371 5' -54.6 NC_004084.1 + 43311 0.76 0.264848
Target:  5'- gCUUCCACCGcuacGGUCACaccGACGACg -3'
miRNA:   3'- aGAAGGUGGCu---CCAGUGgu-CUGCUGg -5'
16371 5' -54.6 NC_004084.1 + 35323 0.73 0.417158
Target:  5'- gCUggCUAuCCGAGGUCGCC-GACGuCCa -3'
miRNA:   3'- aGAa-GGU-GGCUCCAGUGGuCUGCuGG- -5'
16371 5' -54.6 NC_004084.1 + 50988 0.73 0.417158
Target:  5'- --gUUCAUCGAGGUCGgugauaccCCGuGACGACCg -3'
miRNA:   3'- agaAGGUGGCUCCAGU--------GGU-CUGCUGG- -5'
16371 5' -54.6 NC_004084.1 + 574 0.72 0.426531
Target:  5'- aUCUUCCcgGCCGAGGaacUCGagauGACGGCCg -3'
miRNA:   3'- -AGAAGG--UGGCUCC---AGUggu-CUGCUGG- -5'
16371 5' -54.6 NC_004084.1 + 41444 0.71 0.495418
Target:  5'- gCUUCUACCGA-GUCGuCCAGGCGcUCg -3'
miRNA:   3'- aGAAGGUGGCUcCAGU-GGUCUGCuGG- -5'
16371 5' -54.6 NC_004084.1 + 20597 0.71 0.516027
Target:  5'- aUCcUCCaggagggccagACCGAGGUCACCGcauCGAUCg -3'
miRNA:   3'- -AGaAGG-----------UGGCUCCAGUGGUcu-GCUGG- -5'
16371 5' -54.6 NC_004084.1 + 8657 0.7 0.547558
Target:  5'- --gUCCucGCCGAGGgu-CUGGGCGACCc -3'
miRNA:   3'- agaAGG--UGGCUCCaguGGUCUGCUGG- -5'
16371 5' -54.6 NC_004084.1 + 44588 0.7 0.558207
Target:  5'- gCUgCCACgcaGAGGUCAUCgccgAGugGGCCg -3'
miRNA:   3'- aGAaGGUGg--CUCCAGUGG----UCugCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.