Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16371 | 5' | -54.6 | NC_004084.1 | + | 28788 | 0.66 | 0.810217 |
Target: 5'- ---cCCGCgcggccguuCGAGGagaUCGuCCGGGCGACCg -3' miRNA: 3'- agaaGGUG---------GCUCC---AGU-GGUCUGCUGG- -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 41604 | 0.7 | 0.536974 |
Target: 5'- cUCUUCCG-CGAGucGUUcCCAGGCGAUCg -3' miRNA: 3'- -AGAAGGUgGCUC--CAGuGGUCUGCUGG- -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 17966 | 0.71 | 0.485253 |
Target: 5'- gUCUUCagacgaGCuCGAaaGGUCACCAGAguccgauuCGACCg -3' miRNA: 3'- -AGAAGg-----UG-GCU--CCAGUGGUCU--------GCUGG- -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 40284 | 0.71 | 0.473189 |
Target: 5'- cUCgUCCAgcucgaggugaaCGAGGUCGCCGGAguUGGCCa -3' miRNA: 3'- -AGaAGGUg-----------GCUCCAGUGGUCU--GCUGG- -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 12259 | 0.66 | 0.781443 |
Target: 5'- ---gCCGCUGGGGacgUACCcuGCGACCu -3' miRNA: 3'- agaaGGUGGCUCCa--GUGGucUGCUGG- -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 6346 | 0.66 | 0.771534 |
Target: 5'- ---cCCGCCGGGG--GCCAGugcucaucguCGACCg -3' miRNA: 3'- agaaGGUGGCUCCagUGGUCu---------GCUGG- -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 9944 | 0.67 | 0.720102 |
Target: 5'- cUCUUCCGCCGGGcuccCGCguGAgccgcccucgcCGACCu -3' miRNA: 3'- -AGAAGGUGGCUCca--GUGguCU-----------GCUGG- -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 44438 | 0.68 | 0.688129 |
Target: 5'- gUCgcUCGCCGuuGUCACC--GCGACCg -3' miRNA: 3'- -AGaaGGUGGCucCAGUGGucUGCUGG- -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 520 | 0.69 | 0.601306 |
Target: 5'- gUCcUCCGCCgucucGAGGUCGCCguAGACG-CUc -3' miRNA: 3'- -AGaAGGUGG-----CUCCAGUGG--UCUGCuGG- -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 37465 | 0.7 | 0.547558 |
Target: 5'- --gUCUGCCGAGuucGUCGaagUCAGGCGGCCa -3' miRNA: 3'- agaAGGUGGCUC---CAGU---GGUCUGCUGG- -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 54366 | 0.69 | 0.590472 |
Target: 5'- gUCUUCgGCCaGcAGaaugcUUACCAGACGGCCg -3' miRNA: 3'- -AGAAGgUGG-C-UCc----AGUGGUCUGCUGG- -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 5210 | 0.69 | 0.632839 |
Target: 5'- gUCgccaCGCCGAGGUUguaucgacggucgGCCAGcugGCGGCCc -3' miRNA: 3'- -AGaag-GUGGCUCCAG-------------UGGUC---UGCUGG- -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 52348 | 0.66 | 0.800795 |
Target: 5'- ----gCGCCGGGGUU-CCuGGCGAUCg -3' miRNA: 3'- agaagGUGGCUCCAGuGGuCUGCUGG- -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 3929 | 0.7 | 0.579672 |
Target: 5'- ----aCACCGAGGUU-CCGGugGAgCCg -3' miRNA: 3'- agaagGUGGCUCCAGuGGUCugCU-GG- -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 57497 | 0.66 | 0.7912 |
Target: 5'- --gUCCACCucGAGcUCGCCGG-CGACg -3' miRNA: 3'- agaAGGUGG--CUCcAGUGGUCuGCUGg -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 22549 | 0.68 | 0.666533 |
Target: 5'- ---gUCGCCGGGGUCGgCGGccgUGACCa -3' miRNA: 3'- agaaGGUGGCUCCAGUgGUCu--GCUGG- -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 35618 | 0.7 | 0.568914 |
Target: 5'- aCUcgCCGCCGAGGUCcucgaucacGCgCAGgaugucccacucGCGACCg -3' miRNA: 3'- aGAa-GGUGGCUCCAG---------UG-GUC------------UGCUGG- -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 17348 | 0.71 | 0.505677 |
Target: 5'- --cUCCACCGAGGgcaUCGCCGacugcacCGGCCg -3' miRNA: 3'- agaAGGUGGCUCC---AGUGGUcu-----GCUGG- -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 83 | 0.66 | 0.781443 |
Target: 5'- gCUUCC-CC-AGGcCACCGGGCGuCg -3' miRNA: 3'- aGAAGGuGGcUCCaGUGGUCUGCuGg -5' |
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16371 | 5' | -54.6 | NC_004084.1 | + | 31710 | 0.67 | 0.741008 |
Target: 5'- cCUUCCA-CGAGGaaaaaUCGCaAGACGGCg -3' miRNA: 3'- aGAAGGUgGCUCC-----AGUGgUCUGCUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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