miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16372 5' -49.4 NC_004084.1 + 44816 0.66 0.967546
Target:  5'- gGCCGUCGuagauGGCGUCGAuGAG-UCg -3'
miRNA:   3'- gUGGUAGCuu---CUGCAGUUuCUCcAGa -5'
16372 5' -49.4 NC_004084.1 + 11416 0.66 0.963965
Target:  5'- gCGCCA-CGAGGAggagcacaacacCGUCGAGGAGuUCg -3'
miRNA:   3'- -GUGGUaGCUUCU------------GCAGUUUCUCcAGa -5'
16372 5' -49.4 NC_004084.1 + 29476 0.66 0.960115
Target:  5'- -cCCAUCGAGGGCGgCAucaccuuccAGGAGGg-- -3'
miRNA:   3'- guGGUAGCUUCUGCaGU---------UUCUCCaga -5'
16372 5' -49.4 NC_004084.1 + 7885 0.66 0.960115
Target:  5'- cCAgCGUCGAGGuCGUCGAc--GGUCa -3'
miRNA:   3'- -GUgGUAGCUUCuGCAGUUucuCCAGa -5'
16372 5' -49.4 NC_004084.1 + 12145 0.66 0.955992
Target:  5'- -uCCGUCGAcgaagcgauGGAUGUCGcacacGAGGUCg -3'
miRNA:   3'- guGGUAGCU---------UCUGCAGUuu---CUCCAGa -5'
16372 5' -49.4 NC_004084.1 + 53411 0.66 0.955992
Target:  5'- cCACC-UCGAAGACGUgAaccGAGcccgcgaucgccGGGUCa -3'
miRNA:   3'- -GUGGuAGCUUCUGCAgU---UUC------------UCCAGa -5'
16372 5' -49.4 NC_004084.1 + 7546 0.67 0.951587
Target:  5'- uCGCCGUCGccgcucGAGucgcCGUCGGAcuccGAGGUCUc -3'
miRNA:   3'- -GUGGUAGC------UUCu---GCAGUUU----CUCCAGA- -5'
16372 5' -49.4 NC_004084.1 + 15379 0.67 0.951587
Target:  5'- -uCCAUgGAAGAaGUCGAAGAGaGUUc -3'
miRNA:   3'- guGGUAgCUUCUgCAGUUUCUC-CAGa -5'
16372 5' -49.4 NC_004084.1 + 41599 0.67 0.948808
Target:  5'- gAUCGUCGAcuACGUCGAGGAcgaacgcgaggcgacGGUCc -3'
miRNA:   3'- gUGGUAGCUucUGCAGUUUCU---------------CCAGa -5'
16372 5' -49.4 NC_004084.1 + 3676 0.67 0.946897
Target:  5'- gGCCGUCugGAGGACGuUCGucGcGGUCg -3'
miRNA:   3'- gUGGUAG--CUUCUGC-AGUuuCuCCAGa -5'
16372 5' -49.4 NC_004084.1 + 57713 0.67 0.945433
Target:  5'- uCAUCGUCGcccuuguguuggucGAGGCGaUCGuGGAGGUCc -3'
miRNA:   3'- -GUGGUAGC--------------UUCUGC-AGUuUCUCCAGa -5'
16372 5' -49.4 NC_004084.1 + 56019 0.67 0.941916
Target:  5'- cCGCCAa-GGAGAuCGagcUCGAGGAGGUCc -3'
miRNA:   3'- -GUGGUagCUUCU-GC---AGUUUCUCCAGa -5'
16372 5' -49.4 NC_004084.1 + 57402 0.67 0.941916
Target:  5'- uCGCCGcuUUGuAGGCGUCccccucgucGAGGAGGUCc -3'
miRNA:   3'- -GUGGU--AGCuUCUGCAG---------UUUCUCCAGa -5'
16372 5' -49.4 NC_004084.1 + 995 0.67 0.941916
Target:  5'- gGCCGUgGugcuCGUCGAGGAGGUa- -3'
miRNA:   3'- gUGGUAgCuucuGCAGUUUCUCCAga -5'
16372 5' -49.4 NC_004084.1 + 48880 0.67 0.940365
Target:  5'- gGCUcgCGAcgaugcacgacggcAGGCGaUCAuGGAGGUCUg -3'
miRNA:   3'- gUGGuaGCU--------------UCUGC-AGUuUCUCCAGA- -5'
16372 5' -49.4 NC_004084.1 + 21891 0.67 0.936642
Target:  5'- uCACCGUCGAcgcuGACGUU---GAGGUg- -3'
miRNA:   3'- -GUGGUAGCUu---CUGCAGuuuCUCCAga -5'
16372 5' -49.4 NC_004084.1 + 8139 0.67 0.936642
Target:  5'- aCGCCugGUCGGcAGACGUCGAGGAccUCg -3'
miRNA:   3'- -GUGG--UAGCU-UCUGCAGUUUCUccAGa -5'
16372 5' -49.4 NC_004084.1 + 50691 0.67 0.936642
Target:  5'- uCGCCAgcgaggCGAAgGACGUCcucGAGGGGUa- -3'
miRNA:   3'- -GUGGUa-----GCUU-CUGCAGu--UUCUCCAga -5'
16372 5' -49.4 NC_004084.1 + 57733 0.67 0.931073
Target:  5'- gCACCGcUCGAGGACGUCGAcGAaGcCg -3'
miRNA:   3'- -GUGGU-AGCUUCUGCAGUUuCUcCaGa -5'
16372 5' -49.4 NC_004084.1 + 54578 0.68 0.927588
Target:  5'- -gUCGUCGAAGGCGUCcucgaaccggcuuuuGAAGugcaGGGUCg -3'
miRNA:   3'- guGGUAGCUUCUGCAG---------------UUUC----UCCAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.