Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16374 | 3' | -60.7 | NC_004084.1 | + | 30432 | 0.69 | 0.322888 |
Target: 5'- -aCGGAagCGAUGGCgaggacgACGuCCCGCUGGGg -3' miRNA: 3'- ggGUCUg-GCUACCG-------UGC-GGGUGGCCC- -5' |
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16374 | 3' | -60.7 | NC_004084.1 | + | 47456 | 0.69 | 0.331177 |
Target: 5'- aCCCGGA--GAUGGUcgAUGUCgACCGGGa -3' miRNA: 3'- -GGGUCUggCUACCG--UGCGGgUGGCCC- -5' |
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16374 | 3' | -60.7 | NC_004084.1 | + | 29037 | 0.69 | 0.34351 |
Target: 5'- gCCC-GACCGuugcucguucugcUGGCAggccgcgacCGCCCGCuCGGGg -3' miRNA: 3'- -GGGuCUGGCu------------ACCGU---------GCGGGUG-GCCC- -5' |
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16374 | 3' | -60.7 | NC_004084.1 | + | 39449 | 0.69 | 0.354571 |
Target: 5'- cCCCGccGGCCGAcUGGCgcgaGCGCCgAUCGaGGa -3' miRNA: 3'- -GGGU--CUGGCU-ACCG----UGCGGgUGGC-CC- -5' |
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16374 | 3' | -60.7 | NC_004084.1 | + | 55393 | 0.69 | 0.354571 |
Target: 5'- uCCCGGuaucGCCGAcauacucGGCAUGaUCGCCGGGg -3' miRNA: 3'- -GGGUC----UGGCUa------CCGUGCgGGUGGCCC- -5' |
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16374 | 3' | -60.7 | NC_004084.1 | + | 45511 | 0.7 | 0.301783 |
Target: 5'- gCCGGGCCGGUcGGcCACuCCgaggaCGCCGGGa -3' miRNA: 3'- gGGUCUGGCUA-CC-GUGcGG-----GUGGCCC- -5' |
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16374 | 3' | -60.7 | NC_004084.1 | + | 27534 | 0.7 | 0.294756 |
Target: 5'- aCCUggauGGACCGGUGGC-CGCgCACaaGGGc -3' miRNA: 3'- -GGG----UCUGGCUACCGuGCGgGUGg-CCC- -5' |
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16374 | 3' | -60.7 | NC_004084.1 | + | 49437 | 0.7 | 0.297552 |
Target: 5'- gCCCuucuggaacguucggAGAUCGccgcGGUACGCCgACCGGGc -3' miRNA: 3'- -GGG---------------UCUGGCua--CCGUGCGGgUGGCCC- -5' |
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16374 | 3' | -60.7 | NC_004084.1 | + | 516 | 0.71 | 0.267925 |
Target: 5'- gUCGGACuuCGAUGaGCGguuCGCCCGCCGGu -3' miRNA: 3'- gGGUCUG--GCUAC-CGU---GCGGGUGGCCc -5' |
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16374 | 3' | -60.7 | NC_004084.1 | + | 36334 | 0.71 | 0.2431 |
Target: 5'- gCCCAG-CUGgcGGagggaucgcaGCGCCCACCGGu -3' miRNA: 3'- -GGGUCuGGCuaCCg---------UGCGGGUGGCCc -5' |
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16374 | 3' | -60.7 | NC_004084.1 | + | 6380 | 0.74 | 0.150215 |
Target: 5'- gUCGGAgaucuCCGAugUGGCACcguuacggauGCCCGCCGGGg -3' miRNA: 3'- gGGUCU-----GGCU--ACCGUG----------CGGGUGGCCC- -5' |
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16374 | 3' | -60.7 | NC_004084.1 | + | 3665 | 1.11 | 0.000306 |
Target: 5'- aCCCAGACCGAUGGCACGCCCACCGGGc -3' miRNA: 3'- -GGGUCUGGCUACCGUGCGGGUGGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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