miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16374 3' -60.7 NC_004084.1 + 39449 0.69 0.354571
Target:  5'- cCCCGccGGCCGAcUGGCgcgaGCGCCgAUCGaGGa -3'
miRNA:   3'- -GGGU--CUGGCU-ACCG----UGCGGgUGGC-CC- -5'
16374 3' -60.7 NC_004084.1 + 55393 0.69 0.354571
Target:  5'- uCCCGGuaucGCCGAcauacucGGCAUGaUCGCCGGGg -3'
miRNA:   3'- -GGGUC----UGGCUa------CCGUGCgGGUGGCCC- -5'
16374 3' -60.7 NC_004084.1 + 29037 0.69 0.34351
Target:  5'- gCCC-GACCGuugcucguucugcUGGCAggccgcgacCGCCCGCuCGGGg -3'
miRNA:   3'- -GGGuCUGGCu------------ACCGU---------GCGGGUG-GCCC- -5'
16374 3' -60.7 NC_004084.1 + 47456 0.69 0.331177
Target:  5'- aCCCGGA--GAUGGUcgAUGUCgACCGGGa -3'
miRNA:   3'- -GGGUCUggCUACCG--UGCGGgUGGCCC- -5'
16374 3' -60.7 NC_004084.1 + 30432 0.69 0.322888
Target:  5'- -aCGGAagCGAUGGCgaggacgACGuCCCGCUGGGg -3'
miRNA:   3'- ggGUCUg-GCUACCG-------UGC-GGGUGGCCC- -5'
16374 3' -60.7 NC_004084.1 + 45511 0.7 0.301783
Target:  5'- gCCGGGCCGGUcGGcCACuCCgaggaCGCCGGGa -3'
miRNA:   3'- gGGUCUGGCUA-CC-GUGcGG-----GUGGCCC- -5'
16374 3' -60.7 NC_004084.1 + 49437 0.7 0.297552
Target:  5'- gCCCuucuggaacguucggAGAUCGccgcGGUACGCCgACCGGGc -3'
miRNA:   3'- -GGG---------------UCUGGCua--CCGUGCGGgUGGCCC- -5'
16374 3' -60.7 NC_004084.1 + 27534 0.7 0.294756
Target:  5'- aCCUggauGGACCGGUGGC-CGCgCACaaGGGc -3'
miRNA:   3'- -GGG----UCUGGCUACCGuGCGgGUGg-CCC- -5'
16374 3' -60.7 NC_004084.1 + 516 0.71 0.267925
Target:  5'- gUCGGACuuCGAUGaGCGguuCGCCCGCCGGu -3'
miRNA:   3'- gGGUCUG--GCUAC-CGU---GCGGGUGGCCc -5'
16374 3' -60.7 NC_004084.1 + 36334 0.71 0.2431
Target:  5'- gCCCAG-CUGgcGGagggaucgcaGCGCCCACCGGu -3'
miRNA:   3'- -GGGUCuGGCuaCCg---------UGCGGGUGGCCc -5'
16374 3' -60.7 NC_004084.1 + 6380 0.74 0.150215
Target:  5'- gUCGGAgaucuCCGAugUGGCACcguuacggauGCCCGCCGGGg -3'
miRNA:   3'- gGGUCU-----GGCU--ACCGUG----------CGGGUGGCCC- -5'
16374 3' -60.7 NC_004084.1 + 3665 1.11 0.000306
Target:  5'- aCCCAGACCGAUGGCACGCCCACCGGGc -3'
miRNA:   3'- -GGGUCUGGCUACCGUGCGGGUGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.