Results 21 - 32 of 32 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16374 | 3' | -60.7 | NC_004084.1 | + | 23349 | 0.67 | 0.459189 |
Target: 5'- uCCUAcucGA-CGAUGGCGacCGCCUGCCGGu -3' miRNA: 3'- -GGGU---CUgGCUACCGU--GCGGGUGGCCc -5' |
|||||||
16374 | 3' | -60.7 | NC_004084.1 | + | 22806 | 0.67 | 0.42245 |
Target: 5'- gCUGGGCgGAcuucgucGGguCGCUCGCCGGGa -3' miRNA: 3'- gGGUCUGgCUa------CCguGCGGGUGGCCC- -5' |
|||||||
16374 | 3' | -60.7 | NC_004084.1 | + | 22458 | 0.66 | 0.487828 |
Target: 5'- gUCgGGACUGGUcacGGC-CGCCgaccccggcgaCGCCGGGg -3' miRNA: 3'- -GGgUCUGGCUA---CCGuGCGG-----------GUGGCCC- -5' |
|||||||
16374 | 3' | -60.7 | NC_004084.1 | + | 20838 | 0.67 | 0.43147 |
Target: 5'- aCCAGaacucgcucGCCGAgggUGGCACGUCgACCGc- -3' miRNA: 3'- gGGUC---------UGGCU---ACCGUGCGGgUGGCcc -5' |
|||||||
16374 | 3' | -60.7 | NC_004084.1 | + | 16850 | 0.68 | 0.387534 |
Target: 5'- -aCGGugCGA-GGaGCGCCauCACCGGGa -3' miRNA: 3'- ggGUCugGCUaCCgUGCGG--GUGGCCC- -5' |
|||||||
16374 | 3' | -60.7 | NC_004084.1 | + | 16518 | 0.66 | 0.497561 |
Target: 5'- gCCGcGACCGGUGGC---CUCACgCGGGu -3' miRNA: 3'- gGGU-CUGGCUACCGugcGGGUG-GCCC- -5' |
|||||||
16374 | 3' | -60.7 | NC_004084.1 | + | 12836 | 0.68 | 0.379106 |
Target: 5'- uUCAGACCGA-GGCugaacguguGCGCUCuCUGGGc -3' miRNA: 3'- gGGUCUGGCUaCCG---------UGCGGGuGGCCC- -5' |
|||||||
16374 | 3' | -60.7 | NC_004084.1 | + | 6380 | 0.74 | 0.150215 |
Target: 5'- gUCGGAgaucuCCGAugUGGCACcguuacggauGCCCGCCGGGg -3' miRNA: 3'- gGGUCU-----GGCU--ACCGUG----------CGGGUGGCCC- -5' |
|||||||
16374 | 3' | -60.7 | NC_004084.1 | + | 5743 | 0.68 | 0.396084 |
Target: 5'- gCgGGAauuaCGAUgacGGCACuGCCCccGCCGGGg -3' miRNA: 3'- gGgUCUg---GCUA---CCGUG-CGGG--UGGCCC- -5' |
|||||||
16374 | 3' | -60.7 | NC_004084.1 | + | 3753 | 0.67 | 0.459189 |
Target: 5'- gCCAGcCCGGUGG-GCGUgCCAUCGGu -3' miRNA: 3'- gGGUCuGGCUACCgUGCG-GGUGGCCc -5' |
|||||||
16374 | 3' | -60.7 | NC_004084.1 | + | 3665 | 1.11 | 0.000306 |
Target: 5'- aCCCAGACCGAUGGCACGCCCACCGGGc -3' miRNA: 3'- -GGGUCUGGCUACCGUGCGGGUGGCCC- -5' |
|||||||
16374 | 3' | -60.7 | NC_004084.1 | + | 516 | 0.71 | 0.267925 |
Target: 5'- gUCGGACuuCGAUGaGCGguuCGCCCGCCGGu -3' miRNA: 3'- gGGUCUG--GCUAC-CGU---GCGGGUGGCCc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home