miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16374 3' -60.7 NC_004084.1 + 27733 0.68 0.370802
Target:  5'- gCCAGGCgaGAcgcUGGuCAcCGCCCACCaGGa -3'
miRNA:   3'- gGGUCUGg-CU---ACC-GU-GCGGGUGGcCC- -5'
16374 3' -60.7 NC_004084.1 + 36334 0.71 0.2431
Target:  5'- gCCCAG-CUGgcGGagggaucgcaGCGCCCACCGGu -3'
miRNA:   3'- -GGGUCuGGCuaCCg---------UGCGGGUGGCCc -5'
16374 3' -60.7 NC_004084.1 + 49437 0.7 0.297552
Target:  5'- gCCCuucuggaacguucggAGAUCGccgcGGUACGCCgACCGGGc -3'
miRNA:   3'- -GGG---------------UCUGGCua--CCGUGCGGgUGGCCC- -5'
16374 3' -60.7 NC_004084.1 + 12836 0.68 0.379106
Target:  5'- uUCAGACCGA-GGCugaacguguGCGCUCuCUGGGc -3'
miRNA:   3'- gGGUCUGGCUaCCG---------UGCGGGuGGCCC- -5'
16374 3' -60.7 NC_004084.1 + 16850 0.68 0.387534
Target:  5'- -aCGGugCGA-GGaGCGCCauCACCGGGa -3'
miRNA:   3'- ggGUCugGCUaCCgUGCGG--GUGGCCC- -5'
16374 3' -60.7 NC_004084.1 + 43842 0.68 0.396084
Target:  5'- gCCCAG-UCGAUGcccGCgaGCGUCCcgGCCGGGu -3'
miRNA:   3'- -GGGUCuGGCUAC---CG--UGCGGG--UGGCCC- -5'
16374 3' -60.7 NC_004084.1 + 52077 0.68 0.404754
Target:  5'- uCCCAGucCCGc-GGCuucaguucgaACGCCCACUGGu -3'
miRNA:   3'- -GGGUCu-GGCuaCCG----------UGCGGGUGGCCc -5'
16374 3' -60.7 NC_004084.1 + 22806 0.67 0.42245
Target:  5'- gCUGGGCgGAcuucgucGGguCGCUCGCCGGGa -3'
miRNA:   3'- gGGUCUGgCUa------CCguGCGGGUGGCCC- -5'
16374 3' -60.7 NC_004084.1 + 3753 0.67 0.459189
Target:  5'- gCCAGcCCGGUGG-GCGUgCCAUCGGu -3'
miRNA:   3'- gGGUCuGGCUACCgUGCG-GGUGGCCc -5'
16374 3' -60.7 NC_004084.1 + 41778 0.66 0.468638
Target:  5'- --aAGACCG--GGaCGCGCUCGCCGGu -3'
miRNA:   3'- gggUCUGGCuaCC-GUGCGGGUGGCCc -5'
16374 3' -60.7 NC_004084.1 + 56958 0.66 0.517281
Target:  5'- gUCUGGACCGA-GGCgACGgCCgucgaGCCGGa -3'
miRNA:   3'- -GGGUCUGGCUaCCG-UGCgGG-----UGGCCc -5'
16374 3' -60.7 NC_004084.1 + 6380 0.74 0.150215
Target:  5'- gUCGGAgaucuCCGAugUGGCACcguuacggauGCCCGCCGGGg -3'
miRNA:   3'- gGGUCU-----GGCU--ACCGUG----------CGGGUGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.