Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16374 | 3' | -60.7 | NC_004084.1 | + | 56958 | 0.66 | 0.517281 |
Target: 5'- gUCUGGACCGA-GGCgACGgCCgucgaGCCGGa -3' miRNA: 3'- -GGGUCUGGCUaCCG-UGCgGG-----UGGCCc -5' |
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16374 | 3' | -60.7 | NC_004084.1 | + | 52077 | 0.68 | 0.404754 |
Target: 5'- uCCCAGucCCGc-GGCuucaguucgaACGCCCACUGGu -3' miRNA: 3'- -GGGUCu-GGCuaCCG----------UGCGGGUGGCCc -5' |
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16374 | 3' | -60.7 | NC_004084.1 | + | 43842 | 0.68 | 0.396084 |
Target: 5'- gCCCAG-UCGAUGcccGCgaGCGUCCcgGCCGGGu -3' miRNA: 3'- -GGGUCuGGCUAC---CG--UGCGGG--UGGCCC- -5' |
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16374 | 3' | -60.7 | NC_004084.1 | + | 6380 | 0.74 | 0.150215 |
Target: 5'- gUCGGAgaucuCCGAugUGGCACcguuacggauGCCCGCCGGGg -3' miRNA: 3'- gGGUCU-----GGCU--ACCGUG----------CGGGUGGCCC- -5' |
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16374 | 3' | -60.7 | NC_004084.1 | + | 16850 | 0.68 | 0.387534 |
Target: 5'- -aCGGugCGA-GGaGCGCCauCACCGGGa -3' miRNA: 3'- ggGUCugGCUaCCgUGCGG--GUGGCCC- -5' |
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16374 | 3' | -60.7 | NC_004084.1 | + | 22806 | 0.67 | 0.42245 |
Target: 5'- gCUGGGCgGAcuucgucGGguCGCUCGCCGGGa -3' miRNA: 3'- gGGUCUGgCUa------CCguGCGGGUGGCCC- -5' |
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16374 | 3' | -60.7 | NC_004084.1 | + | 12836 | 0.68 | 0.379106 |
Target: 5'- uUCAGACCGA-GGCugaacguguGCGCUCuCUGGGc -3' miRNA: 3'- gGGUCUGGCUaCCG---------UGCGGGuGGCCC- -5' |
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16374 | 3' | -60.7 | NC_004084.1 | + | 49437 | 0.7 | 0.297552 |
Target: 5'- gCCCuucuggaacguucggAGAUCGccgcGGUACGCCgACCGGGc -3' miRNA: 3'- -GGG---------------UCUGGCua--CCGUGCGGgUGGCCC- -5' |
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16374 | 3' | -60.7 | NC_004084.1 | + | 36334 | 0.71 | 0.2431 |
Target: 5'- gCCCAG-CUGgcGGagggaucgcaGCGCCCACCGGu -3' miRNA: 3'- -GGGUCuGGCuaCCg---------UGCGGGUGGCCc -5' |
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16374 | 3' | -60.7 | NC_004084.1 | + | 3753 | 0.67 | 0.459189 |
Target: 5'- gCCAGcCCGGUGG-GCGUgCCAUCGGu -3' miRNA: 3'- gGGUCuGGCUACCgUGCG-GGUGGCCc -5' |
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16374 | 3' | -60.7 | NC_004084.1 | + | 41778 | 0.66 | 0.468638 |
Target: 5'- --aAGACCG--GGaCGCGCUCGCCGGu -3' miRNA: 3'- gggUCUGGCuaCC-GUGCGGGUGGCCc -5' |
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16374 | 3' | -60.7 | NC_004084.1 | + | 16518 | 0.66 | 0.497561 |
Target: 5'- gCCGcGACCGGUGGC---CUCACgCGGGu -3' miRNA: 3'- gGGU-CUGGCUACCGugcGGGUG-GCCC- -5' |
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16374 | 3' | -60.7 | NC_004084.1 | + | 23349 | 0.67 | 0.459189 |
Target: 5'- uCCUAcucGA-CGAUGGCGacCGCCUGCCGGu -3' miRNA: 3'- -GGGU---CUgGCUACCGU--GCGGGUGGCCc -5' |
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16374 | 3' | -60.7 | NC_004084.1 | + | 35888 | 0.67 | 0.440602 |
Target: 5'- gCCAGuGCCGGUcGG-ACGuCCCGCUGGa -3' miRNA: 3'- gGGUC-UGGCUA-CCgUGC-GGGUGGCCc -5' |
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16374 | 3' | -60.7 | NC_004084.1 | + | 20838 | 0.67 | 0.43147 |
Target: 5'- aCCAGaacucgcucGCCGAgggUGGCACGUCgACCGc- -3' miRNA: 3'- gGGUC---------UGGCU---ACCGUGCGGgUGGCcc -5' |
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16374 | 3' | -60.7 | NC_004084.1 | + | 43752 | 0.67 | 0.42245 |
Target: 5'- aCCCGG-CCGGgacgcucgcgGGCaucgacuggGCGCUCGCCGGcGg -3' miRNA: 3'- -GGGUCuGGCUa---------CCG---------UGCGGGUGGCC-C- -5' |
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16374 | 3' | -60.7 | NC_004084.1 | + | 5743 | 0.68 | 0.396084 |
Target: 5'- gCgGGAauuaCGAUgacGGCACuGCCCccGCCGGGg -3' miRNA: 3'- gGgUCUg---GCUA---CCGUG-CGGG--UGGCCC- -5' |
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16374 | 3' | -60.7 | NC_004084.1 | + | 29037 | 0.69 | 0.34351 |
Target: 5'- gCCC-GACCGuugcucguucugcUGGCAggccgcgacCGCCCGCuCGGGg -3' miRNA: 3'- -GGGuCUGGCu------------ACCGU---------GCGGGUG-GCCC- -5' |
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16374 | 3' | -60.7 | NC_004084.1 | + | 47456 | 0.69 | 0.331177 |
Target: 5'- aCCCGGA--GAUGGUcgAUGUCgACCGGGa -3' miRNA: 3'- -GGGUCUggCUACCG--UGCGGgUGGCCC- -5' |
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16374 | 3' | -60.7 | NC_004084.1 | + | 27534 | 0.7 | 0.294756 |
Target: 5'- aCCUggauGGACCGGUGGC-CGCgCACaaGGGc -3' miRNA: 3'- -GGG----UCUGGCUACCGuGCGgGUGg-CCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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