Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16374 | 3' | -60.7 | NC_004084.1 | + | 30432 | 0.69 | 0.322888 |
Target: 5'- -aCGGAagCGAUGGCgaggacgACGuCCCGCUGGGg -3' miRNA: 3'- ggGUCUg-GCUACCG-------UGC-GGGUGGCCC- -5' |
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16374 | 3' | -60.7 | NC_004084.1 | + | 47456 | 0.69 | 0.331177 |
Target: 5'- aCCCGGA--GAUGGUcgAUGUCgACCGGGa -3' miRNA: 3'- -GGGUCUggCUACCG--UGCGGgUGGCCC- -5' |
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16374 | 3' | -60.7 | NC_004084.1 | + | 29037 | 0.69 | 0.34351 |
Target: 5'- gCCC-GACCGuugcucguucugcUGGCAggccgcgacCGCCCGCuCGGGg -3' miRNA: 3'- -GGGuCUGGCu------------ACCGU---------GCGGGUG-GCCC- -5' |
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16374 | 3' | -60.7 | NC_004084.1 | + | 39449 | 0.69 | 0.354571 |
Target: 5'- cCCCGccGGCCGAcUGGCgcgaGCGCCgAUCGaGGa -3' miRNA: 3'- -GGGU--CUGGCU-ACCG----UGCGGgUGGC-CC- -5' |
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16374 | 3' | -60.7 | NC_004084.1 | + | 55393 | 0.69 | 0.354571 |
Target: 5'- uCCCGGuaucGCCGAcauacucGGCAUGaUCGCCGGGg -3' miRNA: 3'- -GGGUC----UGGCUa------CCGUGCgGGUGGCCC- -5' |
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16374 | 3' | -60.7 | NC_004084.1 | + | 27733 | 0.68 | 0.370802 |
Target: 5'- gCCAGGCgaGAcgcUGGuCAcCGCCCACCaGGa -3' miRNA: 3'- gGGUCUGg-CU---ACC-GU-GCGGGUGGcCC- -5' |
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16374 | 3' | -60.7 | NC_004084.1 | + | 5743 | 0.68 | 0.396084 |
Target: 5'- gCgGGAauuaCGAUgacGGCACuGCCCccGCCGGGg -3' miRNA: 3'- gGgUCUg---GCUA---CCGUG-CGGG--UGGCCC- -5' |
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16374 | 3' | -60.7 | NC_004084.1 | + | 43752 | 0.67 | 0.42245 |
Target: 5'- aCCCGG-CCGGgacgcucgcgGGCaucgacuggGCGCUCGCCGGcGg -3' miRNA: 3'- -GGGUCuGGCUa---------CCG---------UGCGGGUGGCC-C- -5' |
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16374 | 3' | -60.7 | NC_004084.1 | + | 20838 | 0.67 | 0.43147 |
Target: 5'- aCCAGaacucgcucGCCGAgggUGGCACGUCgACCGc- -3' miRNA: 3'- gGGUC---------UGGCU---ACCGUGCGGgUGGCcc -5' |
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16374 | 3' | -60.7 | NC_004084.1 | + | 35888 | 0.67 | 0.440602 |
Target: 5'- gCCAGuGCCGGUcGG-ACGuCCCGCUGGa -3' miRNA: 3'- gGGUC-UGGCUA-CCgUGC-GGGUGGCCc -5' |
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16374 | 3' | -60.7 | NC_004084.1 | + | 23349 | 0.67 | 0.459189 |
Target: 5'- uCCUAcucGA-CGAUGGCGacCGCCUGCCGGu -3' miRNA: 3'- -GGGU---CUgGCUACCGU--GCGGGUGGCCc -5' |
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16374 | 3' | -60.7 | NC_004084.1 | + | 3665 | 1.11 | 0.000306 |
Target: 5'- aCCCAGACCGAUGGCACGCCCACCGGGc -3' miRNA: 3'- -GGGUCUGGCUACCGUGCGGGUGGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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