miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16374 5' -57.7 NC_004084.1 + 6 0.66 0.594337
Target:  5'- -gCCCGGUgGCcuggggaaGCCAUCCGu--GCGUg -3'
miRNA:   3'- aaGGGCCAgUG--------UGGUAGGCcuuCGCA- -5'
16374 5' -57.7 NC_004084.1 + 47109 0.66 0.583539
Target:  5'- --gCCGGUCgGCACCugcAUCCGGu-GCGa -3'
miRNA:   3'- aagGGCCAG-UGUGG---UAGGCCuuCGCa -5'
16374 5' -57.7 NC_004084.1 + 24124 0.66 0.551414
Target:  5'- --aCCGcGUCcauCGCCGUCUGGGAGCc- -3'
miRNA:   3'- aagGGC-CAGu--GUGGUAGGCCUUCGca -5'
16374 5' -57.7 NC_004084.1 + 24094 0.66 0.551414
Target:  5'- --aCCGcGUCcauCGCCGUCUGGGAGCc- -3'
miRNA:   3'- aagGGC-CAGu--GUGGUAGGCCUUCGca -5'
16374 5' -57.7 NC_004084.1 + 10761 0.67 0.54082
Target:  5'- gUCCCGaUgAcCGCCAUCCGGuuGGCGc -3'
miRNA:   3'- aAGGGCcAgU-GUGGUAGGCCu-UCGCa -5'
16374 5' -57.7 NC_004084.1 + 3685 0.67 0.54082
Target:  5'- --gUCGGUcCAgGCCGUCUGGAGGaCGUu -3'
miRNA:   3'- aagGGCCA-GUgUGGUAGGCCUUC-GCA- -5'
16374 5' -57.7 NC_004084.1 + 14585 0.67 0.530295
Target:  5'- -aCCUGGUCACGCUGUgCC-GAGGUGa -3'
miRNA:   3'- aaGGGCCAGUGUGGUA-GGcCUUCGCa -5'
16374 5' -57.7 NC_004084.1 + 16190 0.67 0.519847
Target:  5'- gUCUCGG-CAUACuCAUCUGcGAGGCGc -3'
miRNA:   3'- aAGGGCCaGUGUG-GUAGGC-CUUCGCa -5'
16374 5' -57.7 NC_004084.1 + 52968 0.67 0.519847
Target:  5'- cUCgaGGUCGauuCCAuccUCCGGAAGCGa -3'
miRNA:   3'- aAGggCCAGUgu-GGU---AGGCCUUCGCa -5'
16374 5' -57.7 NC_004084.1 + 16766 0.68 0.478927
Target:  5'- cUCCCGGugauggcgcuccUCGCACCGUUCGccgcGGCGUu -3'
miRNA:   3'- aAGGGCC------------AGUGUGGUAGGCcu--UCGCA- -5'
16374 5' -57.7 NC_004084.1 + 46717 0.68 0.468942
Target:  5'- aUCCUcGUCGgGCCA-CCGGAAGCc- -3'
miRNA:   3'- aAGGGcCAGUgUGGUaGGCCUUCGca -5'
16374 5' -57.7 NC_004084.1 + 48367 0.71 0.318168
Target:  5'- gUUCCCGGUCGagAUCGUCaaCGGAGGUGa -3'
miRNA:   3'- -AAGGGCCAGUg-UGGUAG--GCCUUCGCa -5'
16374 5' -57.7 NC_004084.1 + 44625 0.72 0.274398
Target:  5'- -cCUCGGUCGCgACCAaCCGGAcGCGa -3'
miRNA:   3'- aaGGGCCAGUG-UGGUaGGCCUuCGCa -5'
16374 5' -57.7 NC_004084.1 + 3701 1.05 0.00107
Target:  5'- gUUCCCGGUCACACCAUCCGGAAGCGUa -3'
miRNA:   3'- -AAGGGCCAGUGUGGUAGGCCUUCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.