Results 1 - 20 of 36 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16375 | 3' | -55.4 | NC_004084.1 | + | 29523 | 0.66 | 0.761485 |
Target: 5'- -uCUACcaGCGCGCgaCCGACGUCggCCUg -3' miRNA: 3'- guGAUGc-CGCGUG--GGCUGUAGuaGGG- -5' |
|||||||
16375 | 3' | -55.4 | NC_004084.1 | + | 39210 | 0.66 | 0.761485 |
Target: 5'- aCGC-ACGGCGaCAUCUcugucggaGACGUCGUCUa -3' miRNA: 3'- -GUGaUGCCGC-GUGGG--------CUGUAGUAGGg -5' |
|||||||
16375 | 3' | -55.4 | NC_004084.1 | + | 51255 | 0.66 | 0.761485 |
Target: 5'- gACgauCGGCGCguGCUCGGCGacCGUCUCg -3' miRNA: 3'- gUGau-GCCGCG--UGGGCUGUa-GUAGGG- -5' |
|||||||
16375 | 3' | -55.4 | NC_004084.1 | + | 1433 | 0.66 | 0.751306 |
Target: 5'- uCACgACGGUcCGCCCGugGUCuuugaCCa -3' miRNA: 3'- -GUGaUGCCGcGUGGGCugUAGuag--GG- -5' |
|||||||
16375 | 3' | -55.4 | NC_004084.1 | + | 25570 | 0.66 | 0.751306 |
Target: 5'- aACUccggACGGCGCGCaccuuCUGACG-CcgCCCg -3' miRNA: 3'- gUGA----UGCCGCGUG-----GGCUGUaGuaGGG- -5' |
|||||||
16375 | 3' | -55.4 | NC_004084.1 | + | 41698 | 0.66 | 0.739972 |
Target: 5'- gACcgGCGaGCGCGuCCCGgucuucgaccuucAgAUCGUCCCg -3' miRNA: 3'- gUGa-UGC-CGCGU-GGGC-------------UgUAGUAGGG- -5' |
|||||||
16375 | 3' | -55.4 | NC_004084.1 | + | 26942 | 0.66 | 0.730603 |
Target: 5'- uCGCgcgGCGGaCGCGCUC-ACcgCAUCCa -3' miRNA: 3'- -GUGa--UGCC-GCGUGGGcUGuaGUAGGg -5' |
|||||||
16375 | 3' | -55.4 | NC_004084.1 | + | 37423 | 0.66 | 0.730603 |
Target: 5'- aCGCUuggaucucgauaGCGGCgGCACUCGcgaagaguCcgCAUCCCg -3' miRNA: 3'- -GUGA------------UGCCG-CGUGGGCu-------GuaGUAGGG- -5' |
|||||||
16375 | 3' | -55.4 | NC_004084.1 | + | 53295 | 0.66 | 0.730603 |
Target: 5'- aCACgACGGUGCgACUCGACGUgCugcUUCCa -3' miRNA: 3'- -GUGaUGCCGCG-UGGGCUGUA-Gu--AGGG- -5' |
|||||||
16375 | 3' | -55.4 | NC_004084.1 | + | 31154 | 0.66 | 0.720102 |
Target: 5'- ---cGCGGUGgGCCgGACGaCGUCUCa -3' miRNA: 3'- gugaUGCCGCgUGGgCUGUaGUAGGG- -5' |
|||||||
16375 | 3' | -55.4 | NC_004084.1 | + | 8324 | 0.66 | 0.709515 |
Target: 5'- ---aGCGGCGUcgaucguCUCGACGUCG-CCCu -3' miRNA: 3'- gugaUGCCGCGu------GGGCUGUAGUaGGG- -5' |
|||||||
16375 | 3' | -55.4 | NC_004084.1 | + | 37334 | 0.67 | 0.698854 |
Target: 5'- aCGCUuCGGCGauCCCGACGaCG-CCCa -3' miRNA: 3'- -GUGAuGCCGCguGGGCUGUaGUaGGG- -5' |
|||||||
16375 | 3' | -55.4 | NC_004084.1 | + | 41927 | 0.67 | 0.677352 |
Target: 5'- uGCUGUGGCGauauCCCGAUgGUCGUCUCu -3' miRNA: 3'- gUGAUGCCGCgu--GGGCUG-UAGUAGGG- -5' |
|||||||
16375 | 3' | -55.4 | NC_004084.1 | + | 49069 | 0.67 | 0.677352 |
Target: 5'- cCACauCGGCGCgaaGCCCGGCGggaUCAagcaCCCg -3' miRNA: 3'- -GUGauGCCGCG---UGGGCUGU---AGUa---GGG- -5' |
|||||||
16375 | 3' | -55.4 | NC_004084.1 | + | 27287 | 0.68 | 0.643722 |
Target: 5'- cCGCUgacgaucGCGGCGC-CgCUGuuCAUCAUCCUg -3' miRNA: 3'- -GUGA-------UGCCGCGuG-GGCu-GUAGUAGGG- -5' |
|||||||
16375 | 3' | -55.4 | NC_004084.1 | + | 20210 | 0.68 | 0.623043 |
Target: 5'- aCAUUcCGGCGCAagcacgUCGACGUCAUUCg -3' miRNA: 3'- -GUGAuGCCGCGUg-----GGCUGUAGUAGGg -5' |
|||||||
16375 | 3' | -55.4 | NC_004084.1 | + | 31189 | 0.68 | 0.601306 |
Target: 5'- gGCUGgGGaacaGCGCgUCGACGUCGUCgCg -3' miRNA: 3'- gUGAUgCCg---CGUG-GGCUGUAGUAGgG- -5' |
|||||||
16375 | 3' | -55.4 | NC_004084.1 | + | 20539 | 0.69 | 0.579672 |
Target: 5'- gACUACgaGGCGauccgacaccCGCCCGGC--CAUCCCg -3' miRNA: 3'- gUGAUG--CCGC----------GUGGGCUGuaGUAGGG- -5' |
|||||||
16375 | 3' | -55.4 | NC_004084.1 | + | 37168 | 0.69 | 0.579672 |
Target: 5'- aGCU-CGGgGCGuuCGACAUCAUCg- -3' miRNA: 3'- gUGAuGCCgCGUggGCUGUAGUAGgg -5' |
|||||||
16375 | 3' | -55.4 | NC_004084.1 | + | 56228 | 0.69 | 0.558207 |
Target: 5'- gCGCUACuGGCGCAgaUCCGugA-CGacUCCCg -3' miRNA: 3'- -GUGAUG-CCGCGU--GGGCugUaGU--AGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home