miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16375 3' -55.4 NC_004084.1 + 41823 0.69 0.558207
Target:  5'- uCGC--CGGCGUcguCCCGAuCGUCAUCCg -3'
miRNA:   3'- -GUGauGCCGCGu--GGGCU-GUAGUAGGg -5'
16375 3' -55.4 NC_004084.1 + 6506 0.69 0.547558
Target:  5'- -----gGGCGCACCaCGucuCGUCAUCCg -3'
miRNA:   3'- gugaugCCGCGUGG-GCu--GUAGUAGGg -5'
16375 3' -55.4 NC_004084.1 + 43292 0.69 0.536974
Target:  5'- gCACcaggagauCGGCGUcucACCgGGCAUCGUCCa -3'
miRNA:   3'- -GUGau------GCCGCG---UGGgCUGUAGUAGGg -5'
16375 3' -55.4 NC_004084.1 + 4175 0.7 0.526461
Target:  5'- uCGCcgACGGCGCugaucGCuCCGACGUCGagaUCCg -3'
miRNA:   3'- -GUGa-UGCCGCG-----UG-GGCUGUAGU---AGGg -5'
16375 3' -55.4 NC_004084.1 + 34889 0.7 0.526461
Target:  5'- aACUGCGcucgaaGCGUcagGCCCGucgagGCGUCAUCCUg -3'
miRNA:   3'- gUGAUGC------CGCG---UGGGC-----UGUAGUAGGG- -5'
16375 3' -55.4 NC_004084.1 + 5251 0.7 0.516027
Target:  5'- gGCUucGCGGCGCACaCGAggagggccUAUCgAUCCCa -3'
miRNA:   3'- gUGA--UGCCGCGUGgGCU--------GUAG-UAGGG- -5'
16375 3' -55.4 NC_004084.1 + 11289 0.7 0.495418
Target:  5'- -cCUGCGGUGgGacUCCGuuGUCGUCCCa -3'
miRNA:   3'- guGAUGCCGCgU--GGGCugUAGUAGGG- -5'
16375 3' -55.4 NC_004084.1 + 41729 0.7 0.495418
Target:  5'- uCGCc-CGGCGUuugaACUCGACGUCgauGUCCCg -3'
miRNA:   3'- -GUGauGCCGCG----UGGGCUGUAG---UAGGG- -5'
16375 3' -55.4 NC_004084.1 + 2302 0.7 0.475189
Target:  5'- aCACUGCGGCGCA--CGACGUCGa--- -3'
miRNA:   3'- -GUGAUGCCGCGUggGCUGUAGUaggg -5'
16375 3' -55.4 NC_004084.1 + 51616 0.7 0.475189
Target:  5'- gACgucgACGGCGCGggagcugaucCCCGACGUCuucggcGUUCCg -3'
miRNA:   3'- gUGa---UGCCGCGU----------GGGCUGUAG------UAGGG- -5'
16375 3' -55.4 NC_004084.1 + 41170 0.72 0.380956
Target:  5'- ---cGCGGCGacgGCCCG-CAUCGUCUCg -3'
miRNA:   3'- gugaUGCCGCg--UGGGCuGUAGUAGGG- -5'
16375 3' -55.4 NC_004084.1 + 22160 0.73 0.330728
Target:  5'- aGCgccuCGGCGCACUCGAggaCGUCGaCCCg -3'
miRNA:   3'- gUGau--GCCGCGUGGGCU---GUAGUaGGG- -5'
16375 3' -55.4 NC_004084.1 + 42654 0.74 0.322845
Target:  5'- ---gGCGGCGCAgUCCGACGaCGUCCUc -3'
miRNA:   3'- gugaUGCCGCGU-GGGCUGUaGUAGGG- -5'
16375 3' -55.4 NC_004084.1 + 51825 0.74 0.315104
Target:  5'- uCGCUuCGGCGCugCuCGACGaCGUCCa -3'
miRNA:   3'- -GUGAuGCCGCGugG-GCUGUaGUAGGg -5'
16375 3' -55.4 NC_004084.1 + 5138 0.74 0.285548
Target:  5'- -cCU-CGGCGUGgcgaCCGACGUCGUCCCu -3'
miRNA:   3'- guGAuGCCGCGUg---GGCUGUAGUAGGG- -5'
16375 3' -55.4 NC_004084.1 + 3925 1.11 0.000878
Target:  5'- cCACUACGGCGCACCCGACAUCAUCCCc -3'
miRNA:   3'- -GUGAUGCCGCGUGGGCUGUAGUAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.