Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16375 | 3' | -55.4 | NC_004084.1 | + | 1433 | 0.66 | 0.751306 |
Target: 5'- uCACgACGGUcCGCCCGugGUCuuugaCCa -3' miRNA: 3'- -GUGaUGCCGcGUGGGCugUAGuag--GG- -5' |
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16375 | 3' | -55.4 | NC_004084.1 | + | 2302 | 0.7 | 0.475189 |
Target: 5'- aCACUGCGGCGCA--CGACGUCGa--- -3' miRNA: 3'- -GUGAUGCCGCGUggGCUGUAGUaggg -5' |
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16375 | 3' | -55.4 | NC_004084.1 | + | 3925 | 1.11 | 0.000878 |
Target: 5'- cCACUACGGCGCACCCGACAUCAUCCCc -3' miRNA: 3'- -GUGAUGCCGCGUGGGCUGUAGUAGGG- -5' |
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16375 | 3' | -55.4 | NC_004084.1 | + | 4175 | 0.7 | 0.526461 |
Target: 5'- uCGCcgACGGCGCugaucGCuCCGACGUCGagaUCCg -3' miRNA: 3'- -GUGa-UGCCGCG-----UG-GGCUGUAGU---AGGg -5' |
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16375 | 3' | -55.4 | NC_004084.1 | + | 5138 | 0.74 | 0.285548 |
Target: 5'- -cCU-CGGCGUGgcgaCCGACGUCGUCCCu -3' miRNA: 3'- guGAuGCCGCGUg---GGCUGUAGUAGGG- -5' |
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16375 | 3' | -55.4 | NC_004084.1 | + | 5251 | 0.7 | 0.516027 |
Target: 5'- gGCUucGCGGCGCACaCGAggagggccUAUCgAUCCCa -3' miRNA: 3'- gUGA--UGCCGCGUGgGCU--------GUAG-UAGGG- -5' |
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16375 | 3' | -55.4 | NC_004084.1 | + | 6506 | 0.69 | 0.547558 |
Target: 5'- -----gGGCGCACCaCGucuCGUCAUCCg -3' miRNA: 3'- gugaugCCGCGUGG-GCu--GUAGUAGGg -5' |
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16375 | 3' | -55.4 | NC_004084.1 | + | 8324 | 0.66 | 0.709515 |
Target: 5'- ---aGCGGCGUcgaucguCUCGACGUCG-CCCu -3' miRNA: 3'- gugaUGCCGCGu------GGGCUGUAGUaGGG- -5' |
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16375 | 3' | -55.4 | NC_004084.1 | + | 11289 | 0.7 | 0.495418 |
Target: 5'- -cCUGCGGUGgGacUCCGuuGUCGUCCCa -3' miRNA: 3'- guGAUGCCGCgU--GGGCugUAGUAGGG- -5' |
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16375 | 3' | -55.4 | NC_004084.1 | + | 20210 | 0.68 | 0.623043 |
Target: 5'- aCAUUcCGGCGCAagcacgUCGACGUCAUUCg -3' miRNA: 3'- -GUGAuGCCGCGUg-----GGCUGUAGUAGGg -5' |
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16375 | 3' | -55.4 | NC_004084.1 | + | 20539 | 0.69 | 0.579672 |
Target: 5'- gACUACgaGGCGauccgacaccCGCCCGGC--CAUCCCg -3' miRNA: 3'- gUGAUG--CCGC----------GUGGGCUGuaGUAGGG- -5' |
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16375 | 3' | -55.4 | NC_004084.1 | + | 22160 | 0.73 | 0.330728 |
Target: 5'- aGCgccuCGGCGCACUCGAggaCGUCGaCCCg -3' miRNA: 3'- gUGau--GCCGCGUGGGCU---GUAGUaGGG- -5' |
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16375 | 3' | -55.4 | NC_004084.1 | + | 25570 | 0.66 | 0.751306 |
Target: 5'- aACUccggACGGCGCGCaccuuCUGACG-CcgCCCg -3' miRNA: 3'- gUGA----UGCCGCGUG-----GGCUGUaGuaGGG- -5' |
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16375 | 3' | -55.4 | NC_004084.1 | + | 26942 | 0.66 | 0.730603 |
Target: 5'- uCGCgcgGCGGaCGCGCUC-ACcgCAUCCa -3' miRNA: 3'- -GUGa--UGCC-GCGUGGGcUGuaGUAGGg -5' |
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16375 | 3' | -55.4 | NC_004084.1 | + | 27287 | 0.68 | 0.643722 |
Target: 5'- cCGCUgacgaucGCGGCGC-CgCUGuuCAUCAUCCUg -3' miRNA: 3'- -GUGA-------UGCCGCGuG-GGCu-GUAGUAGGG- -5' |
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16375 | 3' | -55.4 | NC_004084.1 | + | 29523 | 0.66 | 0.761485 |
Target: 5'- -uCUACcaGCGCGCgaCCGACGUCggCCUg -3' miRNA: 3'- guGAUGc-CGCGUG--GGCUGUAGuaGGG- -5' |
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16375 | 3' | -55.4 | NC_004084.1 | + | 31154 | 0.66 | 0.720102 |
Target: 5'- ---cGCGGUGgGCCgGACGaCGUCUCa -3' miRNA: 3'- gugaUGCCGCgUGGgCUGUaGUAGGG- -5' |
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16375 | 3' | -55.4 | NC_004084.1 | + | 31189 | 0.68 | 0.601306 |
Target: 5'- gGCUGgGGaacaGCGCgUCGACGUCGUCgCg -3' miRNA: 3'- gUGAUgCCg---CGUG-GGCUGUAGUAGgG- -5' |
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16375 | 3' | -55.4 | NC_004084.1 | + | 34889 | 0.7 | 0.526461 |
Target: 5'- aACUGCGcucgaaGCGUcagGCCCGucgagGCGUCAUCCUg -3' miRNA: 3'- gUGAUGC------CGCG---UGGGC-----UGUAGUAGGG- -5' |
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16375 | 3' | -55.4 | NC_004084.1 | + | 37168 | 0.69 | 0.579672 |
Target: 5'- aGCU-CGGgGCGuuCGACAUCAUCg- -3' miRNA: 3'- gUGAuGCCgCGUggGCUGUAGUAGgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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