miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16375 3' -55.4 NC_004084.1 + 39210 0.66 0.761485
Target:  5'- aCGC-ACGGCGaCAUCUcugucggaGACGUCGUCUa -3'
miRNA:   3'- -GUGaUGCCGC-GUGGG--------CUGUAGUAGGg -5'
16375 3' -55.4 NC_004084.1 + 20210 0.68 0.623043
Target:  5'- aCAUUcCGGCGCAagcacgUCGACGUCAUUCg -3'
miRNA:   3'- -GUGAuGCCGCGUg-----GGCUGUAGUAGGg -5'
16375 3' -55.4 NC_004084.1 + 27287 0.68 0.643722
Target:  5'- cCGCUgacgaucGCGGCGC-CgCUGuuCAUCAUCCUg -3'
miRNA:   3'- -GUGA-------UGCCGCGuG-GGCu-GUAGUAGGG- -5'
16375 3' -55.4 NC_004084.1 + 41927 0.67 0.677352
Target:  5'- uGCUGUGGCGauauCCCGAUgGUCGUCUCu -3'
miRNA:   3'- gUGAUGCCGCgu--GGGCUG-UAGUAGGG- -5'
16375 3' -55.4 NC_004084.1 + 49069 0.67 0.677352
Target:  5'- cCACauCGGCGCgaaGCCCGGCGggaUCAagcaCCCg -3'
miRNA:   3'- -GUGauGCCGCG---UGGGCUGU---AGUa---GGG- -5'
16375 3' -55.4 NC_004084.1 + 37334 0.67 0.698854
Target:  5'- aCGCUuCGGCGauCCCGACGaCG-CCCa -3'
miRNA:   3'- -GUGAuGCCGCguGGGCUGUaGUaGGG- -5'
16375 3' -55.4 NC_004084.1 + 26942 0.66 0.730603
Target:  5'- uCGCgcgGCGGaCGCGCUC-ACcgCAUCCa -3'
miRNA:   3'- -GUGa--UGCC-GCGUGGGcUGuaGUAGGg -5'
16375 3' -55.4 NC_004084.1 + 37423 0.66 0.730603
Target:  5'- aCGCUuggaucucgauaGCGGCgGCACUCGcgaagaguCcgCAUCCCg -3'
miRNA:   3'- -GUGA------------UGCCG-CGUGGGCu-------GuaGUAGGG- -5'
16375 3' -55.4 NC_004084.1 + 41698 0.66 0.739972
Target:  5'- gACcgGCGaGCGCGuCCCGgucuucgaccuucAgAUCGUCCCg -3'
miRNA:   3'- gUGa-UGC-CGCGU-GGGC-------------UgUAGUAGGG- -5'
16375 3' -55.4 NC_004084.1 + 31189 0.68 0.601306
Target:  5'- gGCUGgGGaacaGCGCgUCGACGUCGUCgCg -3'
miRNA:   3'- gUGAUgCCg---CGUG-GGCUGUAGUAGgG- -5'
16375 3' -55.4 NC_004084.1 + 37168 0.69 0.579672
Target:  5'- aGCU-CGGgGCGuuCGACAUCAUCg- -3'
miRNA:   3'- gUGAuGCCgCGUggGCUGUAGUAGgg -5'
16375 3' -55.4 NC_004084.1 + 20539 0.69 0.579672
Target:  5'- gACUACgaGGCGauccgacaccCGCCCGGC--CAUCCCg -3'
miRNA:   3'- gUGAUG--CCGC----------GUGGGCUGuaGUAGGG- -5'
16375 3' -55.4 NC_004084.1 + 5138 0.74 0.285548
Target:  5'- -cCU-CGGCGUGgcgaCCGACGUCGUCCCu -3'
miRNA:   3'- guGAuGCCGCGUg---GGCUGUAGUAGGG- -5'
16375 3' -55.4 NC_004084.1 + 42654 0.74 0.322845
Target:  5'- ---gGCGGCGCAgUCCGACGaCGUCCUc -3'
miRNA:   3'- gugaUGCCGCGU-GGGCUGUaGUAGGG- -5'
16375 3' -55.4 NC_004084.1 + 22160 0.73 0.330728
Target:  5'- aGCgccuCGGCGCACUCGAggaCGUCGaCCCg -3'
miRNA:   3'- gUGau--GCCGCGUGGGCU---GUAGUaGGG- -5'
16375 3' -55.4 NC_004084.1 + 2302 0.7 0.475189
Target:  5'- aCACUGCGGCGCA--CGACGUCGa--- -3'
miRNA:   3'- -GUGAUGCCGCGUggGCUGUAGUaggg -5'
16375 3' -55.4 NC_004084.1 + 51616 0.7 0.475189
Target:  5'- gACgucgACGGCGCGggagcugaucCCCGACGUCuucggcGUUCCg -3'
miRNA:   3'- gUGa---UGCCGCGU----------GGGCUGUAG------UAGGG- -5'
16375 3' -55.4 NC_004084.1 + 5251 0.7 0.516027
Target:  5'- gGCUucGCGGCGCACaCGAggagggccUAUCgAUCCCa -3'
miRNA:   3'- gUGA--UGCCGCGUGgGCU--------GUAG-UAGGG- -5'
16375 3' -55.4 NC_004084.1 + 4175 0.7 0.526461
Target:  5'- uCGCcgACGGCGCugaucGCuCCGACGUCGagaUCCg -3'
miRNA:   3'- -GUGa-UGCCGCG-----UG-GGCUGUAGU---AGGg -5'
16375 3' -55.4 NC_004084.1 + 56228 0.69 0.558207
Target:  5'- gCGCUACuGGCGCAgaUCCGugA-CGacUCCCg -3'
miRNA:   3'- -GUGAUG-CCGCGU--GGGCugUaGU--AGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.