miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16375 5' -60.8 NC_004084.1 + 29170 0.66 0.461176
Target:  5'- gAUGAgcaucuaCCGCGGCGACgacgcccccgagcGG-GCGGuCGCGg -3'
miRNA:   3'- -UGCUa------GGCGCCGCUG-------------UCaCGCC-GCGU- -5'
16375 5' -60.8 NC_004084.1 + 49928 0.66 0.452595
Target:  5'- -gGAUCCgGCGGCGcaggugguCAGUGgGGC-CAg -3'
miRNA:   3'- ugCUAGG-CGCCGCu-------GUCACgCCGcGU- -5'
16375 5' -60.8 NC_004084.1 + 27453 0.66 0.424642
Target:  5'- uCGAUCCggaGCGGgaGACGGU-CGGCGUc -3'
miRNA:   3'- uGCUAGG---CGCCg-CUGUCAcGCCGCGu -5'
16375 5' -60.8 NC_004084.1 + 29140 0.66 0.424642
Target:  5'- gGCGGugUCgGCGGUGcUGGUGUGGuCGCGc -3'
miRNA:   3'- -UGCU--AGgCGCCGCuGUCACGCC-GCGU- -5'
16375 5' -60.8 NC_004084.1 + 7445 0.68 0.34735
Target:  5'- gGCGAgaccucggagUCCGaCGGCGACucgaGCGGCGaCGg -3'
miRNA:   3'- -UGCU----------AGGC-GCCGCUGuca-CGCCGC-GU- -5'
16375 5' -60.8 NC_004084.1 + 1801 0.68 0.326975
Target:  5'- cACGAUCCGgcgaacucgccgacCGGCGACgacgccgcguucacGGUGUGGCuccuGCAg -3'
miRNA:   3'- -UGCUAGGC--------------GCCGCUG--------------UCACGCCG----CGU- -5'
16375 5' -60.8 NC_004084.1 + 34483 0.68 0.316377
Target:  5'- -aGAUCCGCGGCG-UAGUugcGUGGgaGCAa -3'
miRNA:   3'- ugCUAGGCGCCGCuGUCA---CGCCg-CGU- -5'
16375 5' -60.8 NC_004084.1 + 30558 0.69 0.280652
Target:  5'- cACGAacaUCCucaucGCGGCGACGGU-CGGCGa- -3'
miRNA:   3'- -UGCU---AGG-----CGCCGCUGUCAcGCCGCgu -5'
16375 5' -60.8 NC_004084.1 + 7898 0.7 0.267285
Target:  5'- cGCGAUCCGaaccgaGACAGU-CGGCGCGa -3'
miRNA:   3'- -UGCUAGGCgccg--CUGUCAcGCCGCGU- -5'
16375 5' -60.8 NC_004084.1 + 17272 0.7 0.260155
Target:  5'- gGCGAUgCCcucgguggaggcgGUGGCGGCGGUgGCGGCGa- -3'
miRNA:   3'- -UGCUA-GG-------------CGCCGCUGUCA-CGCCGCgu -5'
16375 5' -60.8 NC_004084.1 + 51908 0.7 0.254438
Target:  5'- uCGAga-GUGGCGACAGUcgGCGGgCGCGg -3'
miRNA:   3'- uGCUaggCGCCGCUGUCA--CGCC-GCGU- -5'
16375 5' -60.8 NC_004084.1 + 48193 0.71 0.224536
Target:  5'- gGCGA-CCucaaGCGGCGACGGgugGCGGaaaGCGg -3'
miRNA:   3'- -UGCUaGG----CGCCGCUGUCa--CGCCg--CGU- -5'
16375 5' -60.8 NC_004084.1 + 16863 0.71 0.213435
Target:  5'- aACG--CCGCGGCGaACGGUGCGaggaGCGCc -3'
miRNA:   3'- -UGCuaGGCGCCGC-UGUCACGC----CGCGu -5'
16375 5' -60.8 NC_004084.1 + 51453 0.71 0.20281
Target:  5'- gGCGAgggCCGCGGCGGCuGUaCGG-GCGa -3'
miRNA:   3'- -UGCUa--GGCGCCGCUGuCAcGCCgCGU- -5'
16375 5' -60.8 NC_004084.1 + 3961 1.08 0.000394
Target:  5'- gACGAUCCGCGGCGACAGUGCGGCGCAg -3'
miRNA:   3'- -UGCUAGGCGCCGCUGUCACGCCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.