Results 1 - 15 of 15 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16375 | 5' | -60.8 | NC_004084.1 | + | 49928 | 0.66 | 0.452595 |
Target: 5'- -gGAUCCgGCGGCGcaggugguCAGUGgGGC-CAg -3' miRNA: 3'- ugCUAGG-CGCCGCu-------GUCACgCCGcGU- -5' |
|||||||
16375 | 5' | -60.8 | NC_004084.1 | + | 27453 | 0.66 | 0.424642 |
Target: 5'- uCGAUCCggaGCGGgaGACGGU-CGGCGUc -3' miRNA: 3'- uGCUAGG---CGCCg-CUGUCAcGCCGCGu -5' |
|||||||
16375 | 5' | -60.8 | NC_004084.1 | + | 29140 | 0.66 | 0.424642 |
Target: 5'- gGCGGugUCgGCGGUGcUGGUGUGGuCGCGc -3' miRNA: 3'- -UGCU--AGgCGCCGCuGUCACGCC-GCGU- -5' |
|||||||
16375 | 5' | -60.8 | NC_004084.1 | + | 29170 | 0.66 | 0.461176 |
Target: 5'- gAUGAgcaucuaCCGCGGCGACgacgcccccgagcGG-GCGGuCGCGg -3' miRNA: 3'- -UGCUa------GGCGCCGCUG-------------UCaCGCC-GCGU- -5' |
|||||||
16375 | 5' | -60.8 | NC_004084.1 | + | 1801 | 0.68 | 0.326975 |
Target: 5'- cACGAUCCGgcgaacucgccgacCGGCGACgacgccgcguucacGGUGUGGCuccuGCAg -3' miRNA: 3'- -UGCUAGGC--------------GCCGCUG--------------UCACGCCG----CGU- -5' |
|||||||
16375 | 5' | -60.8 | NC_004084.1 | + | 7445 | 0.68 | 0.34735 |
Target: 5'- gGCGAgaccucggagUCCGaCGGCGACucgaGCGGCGaCGg -3' miRNA: 3'- -UGCU----------AGGC-GCCGCUGuca-CGCCGC-GU- -5' |
|||||||
16375 | 5' | -60.8 | NC_004084.1 | + | 34483 | 0.68 | 0.316377 |
Target: 5'- -aGAUCCGCGGCG-UAGUugcGUGGgaGCAa -3' miRNA: 3'- ugCUAGGCGCCGCuGUCA---CGCCg-CGU- -5' |
|||||||
16375 | 5' | -60.8 | NC_004084.1 | + | 30558 | 0.69 | 0.280652 |
Target: 5'- cACGAacaUCCucaucGCGGCGACGGU-CGGCGa- -3' miRNA: 3'- -UGCU---AGG-----CGCCGCUGUCAcGCCGCgu -5' |
|||||||
16375 | 5' | -60.8 | NC_004084.1 | + | 7898 | 0.7 | 0.267285 |
Target: 5'- cGCGAUCCGaaccgaGACAGU-CGGCGCGa -3' miRNA: 3'- -UGCUAGGCgccg--CUGUCAcGCCGCGU- -5' |
|||||||
16375 | 5' | -60.8 | NC_004084.1 | + | 17272 | 0.7 | 0.260155 |
Target: 5'- gGCGAUgCCcucgguggaggcgGUGGCGGCGGUgGCGGCGa- -3' miRNA: 3'- -UGCUA-GG-------------CGCCGCUGUCA-CGCCGCgu -5' |
|||||||
16375 | 5' | -60.8 | NC_004084.1 | + | 51908 | 0.7 | 0.254438 |
Target: 5'- uCGAga-GUGGCGACAGUcgGCGGgCGCGg -3' miRNA: 3'- uGCUaggCGCCGCUGUCA--CGCC-GCGU- -5' |
|||||||
16375 | 5' | -60.8 | NC_004084.1 | + | 16863 | 0.71 | 0.213435 |
Target: 5'- aACG--CCGCGGCGaACGGUGCGaggaGCGCc -3' miRNA: 3'- -UGCuaGGCGCCGC-UGUCACGC----CGCGu -5' |
|||||||
16375 | 5' | -60.8 | NC_004084.1 | + | 48193 | 0.71 | 0.224536 |
Target: 5'- gGCGA-CCucaaGCGGCGACGGgugGCGGaaaGCGg -3' miRNA: 3'- -UGCUaGG----CGCCGCUGUCa--CGCCg--CGU- -5' |
|||||||
16375 | 5' | -60.8 | NC_004084.1 | + | 51453 | 0.71 | 0.20281 |
Target: 5'- gGCGAgggCCGCGGCGGCuGUaCGG-GCGa -3' miRNA: 3'- -UGCUa--GGCGCCGCUGuCAcGCCgCGU- -5' |
|||||||
16375 | 5' | -60.8 | NC_004084.1 | + | 3961 | 1.08 | 0.000394 |
Target: 5'- gACGAUCCGCGGCGACAGUGCGGCGCAg -3' miRNA: 3'- -UGCUAGGCGCCGCUGUCACGCCGCGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home