miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16376 5' -57.7 NC_004084.1 + 56189 0.66 0.614779
Target:  5'- aUCUCCGCgcugGCCGaAGcGAGCGGCGa -3'
miRNA:   3'- aAGAGGUGgcugCGGC-UC-CUUGUCGC- -5'
16376 5' -57.7 NC_004084.1 + 57519 0.66 0.614779
Target:  5'- -aCUCCGaCGACGCCGA----CAGCGa -3'
miRNA:   3'- aaGAGGUgGCUGCGGCUccuuGUCGC- -5'
16376 5' -57.7 NC_004084.1 + 11614 0.66 0.614779
Target:  5'- ---gCCGCCgGACGCCGAGuu-CGGUGa -3'
miRNA:   3'- aagaGGUGG-CUGCGGCUCcuuGUCGC- -5'
16376 5' -57.7 NC_004084.1 + 49695 0.66 0.602888
Target:  5'- --aUCCACgagggUGACGCCGAGGAgguucuuGCAGa- -3'
miRNA:   3'- aagAGGUG-----GCUGCGGCUCCU-------UGUCgc -5'
16376 5' -57.7 NC_004084.1 + 5497 0.66 0.593179
Target:  5'- aUUCUUCACCGAUGaCGAGGu-CAGa- -3'
miRNA:   3'- -AAGAGGUGGCUGCgGCUCCuuGUCgc -5'
16376 5' -57.7 NC_004084.1 + 30107 0.66 0.593179
Target:  5'- -gCUCCGgaCGuCGCUGGGGAGCGGg- -3'
miRNA:   3'- aaGAGGUg-GCuGCGGCUCCUUGUCgc -5'
16376 5' -57.7 NC_004084.1 + 6523 0.66 0.56957
Target:  5'- gUUCUUCGCUGACGCgGAGaaguucgauuucGACAGCu -3'
miRNA:   3'- -AAGAGGUGGCUGCGgCUCc-----------UUGUCGc -5'
16376 5' -57.7 NC_004084.1 + 22483 0.67 0.550426
Target:  5'- ---cCCGgCGACGCCG-GGGACAuGCu -3'
miRNA:   3'- aagaGGUgGCUGCGGCuCCUUGU-CGc -5'
16376 5' -57.7 NC_004084.1 + 45527 0.67 0.550426
Target:  5'- -aCUCCGagGACGCCG-GGAugGGUu -3'
miRNA:   3'- aaGAGGUggCUGCGGCuCCUugUCGc -5'
16376 5' -57.7 NC_004084.1 + 23829 0.67 0.550426
Target:  5'- gUCUCCACCGuCGC-GAuGGAgGCAGUc -3'
miRNA:   3'- aAGAGGUGGCuGCGgCU-CCU-UGUCGc -5'
16376 5' -57.7 NC_004084.1 + 2913 0.67 0.550426
Target:  5'- --aUCCACCgcgGACGCCGAGGuugaGGUc -3'
miRNA:   3'- aagAGGUGG---CUGCGGCUCCuug-UCGc -5'
16376 5' -57.7 NC_004084.1 + 52049 0.67 0.550426
Target:  5'- ---cCCACUGGuCGCCGuGGAGCGGg- -3'
miRNA:   3'- aagaGGUGGCU-GCGGCuCCUUGUCgc -5'
16376 5' -57.7 NC_004084.1 + 30411 0.67 0.539876
Target:  5'- -----aGCCGACGUCGAcGGGCGGCGa -3'
miRNA:   3'- aagaggUGGCUGCGGCUcCUUGUCGC- -5'
16376 5' -57.7 NC_004084.1 + 49529 0.67 0.529395
Target:  5'- --aUCCACgGACGaUCGAGGugauCGGCGu -3'
miRNA:   3'- aagAGGUGgCUGC-GGCUCCuu--GUCGC- -5'
16376 5' -57.7 NC_004084.1 + 3830 0.67 0.529395
Target:  5'- gUCUUCGUCGACGCCGAcG-ACGGCu -3'
miRNA:   3'- aAGAGGUGGCUGCGGCUcCuUGUCGc -5'
16376 5' -57.7 NC_004084.1 + 51725 0.67 0.508666
Target:  5'- -cCUCCugCggaacgccgaaGACGUCGGGGAuCAGCu -3'
miRNA:   3'- aaGAGGugG-----------CUGCGGCUCCUuGUCGc -5'
16376 5' -57.7 NC_004084.1 + 53111 0.67 0.498429
Target:  5'- -aCUCgACgGAgcCGCCGAGuGGAUGGCGg -3'
miRNA:   3'- aaGAGgUGgCU--GCGGCUC-CUUGUCGC- -5'
16376 5' -57.7 NC_004084.1 + 22558 0.67 0.498429
Target:  5'- gUCcCCGgCGuCGCCGGGGu-CGGCGg -3'
miRNA:   3'- aAGaGGUgGCuGCGGCUCCuuGUCGC- -5'
16376 5' -57.7 NC_004084.1 + 46972 0.67 0.498429
Target:  5'- -cCUCCugCaGcCGCCGGGGcgUGGCGg -3'
miRNA:   3'- aaGAGGugG-CuGCGGCUCCuuGUCGC- -5'
16376 5' -57.7 NC_004084.1 + 21916 0.68 0.488286
Target:  5'- -cCUCCucaucgaguUCGACGUCGAGGAAauuguCGGCGu -3'
miRNA:   3'- aaGAGGu--------GGCUGCGGCUCCUU-----GUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.