miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16379 3' -53.1 NC_004084.1 + 9217 0.66 0.860655
Target:  5'- gCGAAGGcguuCGGGuGGa--GCGAGGAGa -3'
miRNA:   3'- gGCUUCUu---GUCCuCCgcaUGCUCCUC- -5'
16379 3' -53.1 NC_004084.1 + 25499 0.66 0.860655
Target:  5'- -gGAAGcuCGGGAuGCGgauCGGGGAGa -3'
miRNA:   3'- ggCUUCuuGUCCUcCGCau-GCUCCUC- -5'
16379 3' -53.1 NC_004084.1 + 10085 0.66 0.85233
Target:  5'- gCCGAGGAcgaAGGGGGCGcgACGAu--- -3'
miRNA:   3'- -GGCUUCUug-UCCUCCGCa-UGCUccuc -5'
16379 3' -53.1 NC_004084.1 + 44843 0.66 0.847224
Target:  5'- aCCGAGGucgGAucggcccgcgacuucCAGGAGGaCGUcGCuGAGGAGg -3'
miRNA:   3'- -GGCUUC---UU---------------GUCCUCC-GCA-UG-CUCCUC- -5'
16379 3' -53.1 NC_004084.1 + 48929 0.66 0.843775
Target:  5'- uUCGAG--GCAGGuGGC-UACGAGGuGa -3'
miRNA:   3'- -GGCUUcuUGUCCuCCGcAUGCUCCuC- -5'
16379 3' -53.1 NC_004084.1 + 9530 0.66 0.841164
Target:  5'- aCCGAcggugcaucacuguGGAGUGGGAguacGGC-UACGAGGAGg -3'
miRNA:   3'- -GGCU--------------UCUUGUCCU----CCGcAUGCUCCUC- -5'
16379 3' -53.1 NC_004084.1 + 17329 0.67 0.834108
Target:  5'- aUCGAGGAgaucaacGCcGGAGGCGaggGCucgaguGAGGAGa -3'
miRNA:   3'- -GGCUUCU-------UGuCCUCCGCa--UG------CUCCUC- -5'
16379 3' -53.1 NC_004084.1 + 54043 0.67 0.826007
Target:  5'- aCGAGGAcgGCuacgguuGGAcGCGcgACGAGGAGa -3'
miRNA:   3'- gGCUUCU--UGu------CCUcCGCa-UGCUCCUC- -5'
16379 3' -53.1 NC_004084.1 + 4051 0.67 0.816814
Target:  5'- gCGGAGuuGACGGaGaAGGgGcGCGAGGAGa -3'
miRNA:   3'- gGCUUC--UUGUC-C-UCCgCaUGCUCCUC- -5'
16379 3' -53.1 NC_004084.1 + 38372 0.67 0.816814
Target:  5'- gCCGGAucGAgcGCGGGaAGGCGacCGAGGAc -3'
miRNA:   3'- -GGCUU--CU--UGUCC-UCCGCauGCUCCUc -5'
16379 3' -53.1 NC_004084.1 + 23305 0.67 0.816814
Target:  5'- aUCGAcaAGAACuguacgcuGAGGCGUuCGAGGAu -3'
miRNA:   3'- -GGCU--UCUUGuc------CUCCGCAuGCUCCUc -5'
16379 3' -53.1 NC_004084.1 + 54839 0.67 0.797857
Target:  5'- gCGggGGuuGGGcuuGGCGU-CGAGGAa -3'
miRNA:   3'- gGCuuCUugUCCu--CCGCAuGCUCCUc -5'
16379 3' -53.1 NC_004084.1 + 8954 0.68 0.777209
Target:  5'- uCCGAGGAcaGCGGcGAcgaagacGGCGggACGAGGGc -3'
miRNA:   3'- -GGCUUCU--UGUC-CU-------CCGCa-UGCUCCUc -5'
16379 3' -53.1 NC_004084.1 + 13225 0.68 0.768152
Target:  5'- aCGAGGAGCAaGAauGGCcgauCGAGGAGg -3'
miRNA:   3'- gGCUUCUUGUcCU--CCGcau-GCUCCUC- -5'
16379 3' -53.1 NC_004084.1 + 4354 0.68 0.73719
Target:  5'- gCCGAGGAACAgcGGaAGGaGUucGCuGAGGAGa -3'
miRNA:   3'- -GGCUUCUUGU--CC-UCCgCA--UG-CUCCUC- -5'
16379 3' -53.1 NC_004084.1 + 40901 0.69 0.694484
Target:  5'- gCGgcGAcGCuGGAGGCcuggACGAGGAGc -3'
miRNA:   3'- gGCuuCU-UGuCCUCCGca--UGCUCCUC- -5'
16379 3' -53.1 NC_004084.1 + 25288 0.69 0.68363
Target:  5'- gCCGAAG-ACA-GAGGCGgcCGAGcGGGc -3'
miRNA:   3'- -GGCUUCuUGUcCUCCGCauGCUC-CUC- -5'
16379 3' -53.1 NC_004084.1 + 41813 0.69 0.682541
Target:  5'- cUCGAGGAGCccgccggguccguAGGGGGUG-ACGAGGc- -3'
miRNA:   3'- -GGCUUCUUG-------------UCCUCCGCaUGCUCCuc -5'
16379 3' -53.1 NC_004084.1 + 12343 0.7 0.650813
Target:  5'- cCUGAAGAGCAGGGGaCGUuCGaAGGuGg -3'
miRNA:   3'- -GGCUUCUUGUCCUCcGCAuGC-UCCuC- -5'
16379 3' -53.1 NC_004084.1 + 1161 0.7 0.650813
Target:  5'- gCCGGAGA--AGGAGGCGgugaagGCGaAGGuGu -3'
miRNA:   3'- -GGCUUCUugUCCUCCGCa-----UGC-UCCuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.