Results 1 - 20 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16379 | 3' | -53.1 | NC_004084.1 | + | 4888 | 1.11 | 0.001653 |
Target: 5'- cCCGAAGAACAGGAGGCGUACGAGGAGu -3' miRNA: 3'- -GGCUUCUUGUCCUCCGCAUGCUCCUC- -5' |
|||||||
16379 | 3' | -53.1 | NC_004084.1 | + | 30685 | 0.77 | 0.30072 |
Target: 5'- aCGAAaaagaagaaguucGAGCAGGAGcGCGU-CGAGGAGc -3' miRNA: 3'- gGCUU-------------CUUGUCCUC-CGCAuGCUCCUC- -5' |
|||||||
16379 | 3' | -53.1 | NC_004084.1 | + | 56978 | 0.74 | 0.429766 |
Target: 5'- uCCGAGcGA--AGGAGGCGgcCGAGGAc -3' miRNA: 3'- -GGCUU-CUugUCCUCCGCauGCUCCUc -5' |
|||||||
16379 | 3' | -53.1 | NC_004084.1 | + | 51650 | 0.74 | 0.439401 |
Target: 5'- uUCGgcGuuccGCAGGAGGCGaugauCGAGGAGu -3' miRNA: 3'- -GGCuuCu---UGUCCUCCGCau---GCUCCUC- -5' |
|||||||
16379 | 3' | -53.1 | NC_004084.1 | + | 43945 | 0.74 | 0.449158 |
Target: 5'- gCCGAcGcuCAGGAGGCGgccugggaggGCGAGGGa -3' miRNA: 3'- -GGCUuCuuGUCCUCCGCa---------UGCUCCUc -5' |
|||||||
16379 | 3' | -53.1 | NC_004084.1 | + | 47233 | 0.7 | 0.639827 |
Target: 5'- gCCGuAGAGCAGGAGGU--ACGAGu-- -3' miRNA: 3'- -GGCuUCUUGUCCUCCGcaUGCUCcuc -5' |
|||||||
16379 | 3' | -53.1 | NC_004084.1 | + | 1161 | 0.7 | 0.650813 |
Target: 5'- gCCGGAGA--AGGAGGCGgugaagGCGaAGGuGu -3' miRNA: 3'- -GGCUUCUugUCCUCCGCa-----UGC-UCCuC- -5' |
|||||||
16379 | 3' | -53.1 | NC_004084.1 | + | 39736 | 0.7 | 0.650813 |
Target: 5'- aCGAGGAugACgAGGAGGacucCGAGGAGg -3' miRNA: 3'- gGCUUCU--UG-UCCUCCgcauGCUCCUC- -5' |
|||||||
16379 | 3' | -53.1 | NC_004084.1 | + | 12343 | 0.7 | 0.650813 |
Target: 5'- cCUGAAGAGCAGGGGaCGUuCGaAGGuGg -3' miRNA: 3'- -GGCUUCUUGUCCUCcGCAuGC-UCCuC- -5' |
|||||||
16379 | 3' | -53.1 | NC_004084.1 | + | 41813 | 0.69 | 0.682541 |
Target: 5'- cUCGAGGAGCccgccggguccguAGGGGGUG-ACGAGGc- -3' miRNA: 3'- -GGCUUCUUG-------------UCCUCCGCaUGCUCCuc -5' |
|||||||
16379 | 3' | -53.1 | NC_004084.1 | + | 25288 | 0.69 | 0.68363 |
Target: 5'- gCCGAAG-ACA-GAGGCGgcCGAGcGGGc -3' miRNA: 3'- -GGCUUCuUGUcCUCCGCauGCUC-CUC- -5' |
|||||||
16379 | 3' | -53.1 | NC_004084.1 | + | 40901 | 0.69 | 0.694484 |
Target: 5'- gCGgcGAcGCuGGAGGCcuggACGAGGAGc -3' miRNA: 3'- gGCuuCU-UGuCCUCCGca--UGCUCCUC- -5' |
|||||||
16379 | 3' | -53.1 | NC_004084.1 | + | 4354 | 0.68 | 0.73719 |
Target: 5'- gCCGAGGAACAgcGGaAGGaGUucGCuGAGGAGa -3' miRNA: 3'- -GGCUUCUUGU--CC-UCCgCA--UG-CUCCUC- -5' |
|||||||
16379 | 3' | -53.1 | NC_004084.1 | + | 13225 | 0.68 | 0.768152 |
Target: 5'- aCGAGGAGCAaGAauGGCcgauCGAGGAGg -3' miRNA: 3'- gGCUUCUUGUcCU--CCGcau-GCUCCUC- -5' |
|||||||
16379 | 3' | -53.1 | NC_004084.1 | + | 8954 | 0.68 | 0.777209 |
Target: 5'- uCCGAGGAcaGCGGcGAcgaagacGGCGggACGAGGGc -3' miRNA: 3'- -GGCUUCU--UGUC-CU-------CCGCa-UGCUCCUc -5' |
|||||||
16379 | 3' | -53.1 | NC_004084.1 | + | 54839 | 0.67 | 0.797857 |
Target: 5'- gCGggGGuuGGGcuuGGCGU-CGAGGAa -3' miRNA: 3'- gGCuuCUugUCCu--CCGCAuGCUCCUc -5' |
|||||||
16379 | 3' | -53.1 | NC_004084.1 | + | 4051 | 0.67 | 0.816814 |
Target: 5'- gCGGAGuuGACGGaGaAGGgGcGCGAGGAGa -3' miRNA: 3'- gGCUUC--UUGUC-C-UCCgCaUGCUCCUC- -5' |
|||||||
16379 | 3' | -53.1 | NC_004084.1 | + | 38372 | 0.67 | 0.816814 |
Target: 5'- gCCGGAucGAgcGCGGGaAGGCGacCGAGGAc -3' miRNA: 3'- -GGCUU--CU--UGUCC-UCCGCauGCUCCUc -5' |
|||||||
16379 | 3' | -53.1 | NC_004084.1 | + | 23305 | 0.67 | 0.816814 |
Target: 5'- aUCGAcaAGAACuguacgcuGAGGCGUuCGAGGAu -3' miRNA: 3'- -GGCU--UCUUGuc------CUCCGCAuGCUCCUc -5' |
|||||||
16379 | 3' | -53.1 | NC_004084.1 | + | 54043 | 0.67 | 0.826007 |
Target: 5'- aCGAGGAcgGCuacgguuGGAcGCGcgACGAGGAGa -3' miRNA: 3'- gGCUUCU--UGu------CCUcCGCa-UGCUCCUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home