miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1638 3' -49.6 NC_001347.2 + 76743 0.66 0.999553
Target:  5'- gGAUGGUGGUCuccucGUGCGgcucgcacacGCGGUAGCg -3'
miRNA:   3'- -UUGCCAUUAGugu--CAUGC----------UGCCGUUG- -5'
1638 3' -49.6 NC_001347.2 + 187054 0.66 0.999553
Target:  5'- cGCGGg---CGCAGUcCGG-GGCGACg -3'
miRNA:   3'- uUGCCauuaGUGUCAuGCUgCCGUUG- -5'
1638 3' -49.6 NC_001347.2 + 144552 0.66 0.999553
Target:  5'- cAGCaGUAcUCACAGUcagaggaauaACGGUGGCGGCg -3'
miRNA:   3'- -UUGcCAUuAGUGUCA----------UGCUGCCGUUG- -5'
1638 3' -49.6 NC_001347.2 + 198646 0.66 0.999553
Target:  5'- uGCGcGUAGucuUCGCGcaACGACGGCAGu -3'
miRNA:   3'- uUGC-CAUU---AGUGUcaUGCUGCCGUUg -5'
1638 3' -49.6 NC_001347.2 + 157202 0.66 0.999445
Target:  5'- -cUGGUGAUCggccGCGGUGCG-CuGCAGCc -3'
miRNA:   3'- uuGCCAUUAG----UGUCAUGCuGcCGUUG- -5'
1638 3' -49.6 NC_001347.2 + 1939 0.66 0.999445
Target:  5'- cGCGGUGGcugggcugCGCGGcggggccgGCGACGGgGACg -3'
miRNA:   3'- uUGCCAUUa-------GUGUCa-------UGCUGCCgUUG- -5'
1638 3' -49.6 NC_001347.2 + 93441 0.66 0.999445
Target:  5'- cACGGcgcgAAUCAgCAcGUAcuCGACGGCGAUg -3'
miRNA:   3'- uUGCCa---UUAGU-GU-CAU--GCUGCCGUUG- -5'
1638 3' -49.6 NC_001347.2 + 128254 0.66 0.999433
Target:  5'- --aGGUGcucgccuAUCACcuGUACGGUGGCGACg -3'
miRNA:   3'- uugCCAU-------UAGUGu-CAUGCUGCCGUUG- -5'
1638 3' -49.6 NC_001347.2 + 158018 0.66 0.999314
Target:  5'- cGGCGGUAGgacaCGCGG-GCGcCGGaCAGCa -3'
miRNA:   3'- -UUGCCAUUa---GUGUCaUGCuGCC-GUUG- -5'
1638 3' -49.6 NC_001347.2 + 36352 0.66 0.998973
Target:  5'- gAGCGGgguaugCGuguuCAGUugGGCGGCAGg -3'
miRNA:   3'- -UUGCCauua--GU----GUCAugCUGCCGUUg -5'
1638 3' -49.6 NC_001347.2 + 87604 0.66 0.998973
Target:  5'- cGCGGUGcaCGCccGUgcccaccaGCGACGGCGGCu -3'
miRNA:   3'- uUGCCAUuaGUGu-CA--------UGCUGCCGUUG- -5'
1638 3' -49.6 NC_001347.2 + 184966 0.66 0.998973
Target:  5'- gGGCGGc--UCGCGGagacugggcUGCaGGCGGCAGCg -3'
miRNA:   3'- -UUGCCauuAGUGUC---------AUG-CUGCCGUUG- -5'
1638 3' -49.6 NC_001347.2 + 165319 0.66 0.998973
Target:  5'- uGAUGGaGAcccUCGCAGUgauacACGGCGGCGu- -3'
miRNA:   3'- -UUGCCaUU---AGUGUCA-----UGCUGCCGUug -5'
1638 3' -49.6 NC_001347.2 + 140688 0.67 0.998753
Target:  5'- cGCGGcGGUCGCAuGUugGGCGcUAGCg -3'
miRNA:   3'- uUGCCaUUAGUGU-CAugCUGCcGUUG- -5'
1638 3' -49.6 NC_001347.2 + 87243 0.67 0.998753
Target:  5'- aGACGGUGcgaGCAGUugGggauGCGGCGc- -3'
miRNA:   3'- -UUGCCAUuagUGUCAugC----UGCCGUug -5'
1638 3' -49.6 NC_001347.2 + 142578 0.67 0.998753
Target:  5'- cGGCGGgagcaGCGGgggcgGCGGgGGCAGCg -3'
miRNA:   3'- -UUGCCauuagUGUCa----UGCUgCCGUUG- -5'
1638 3' -49.6 NC_001347.2 + 2668 0.67 0.998753
Target:  5'- cACGGUGGUUAUggAGgcCGGCGGCc-- -3'
miRNA:   3'- uUGCCAUUAGUG--UCauGCUGCCGuug -5'
1638 3' -49.6 NC_001347.2 + 184867 0.67 0.998495
Target:  5'- -cUGGUGcUCGCAGUA-GugGcGCAGCu -3'
miRNA:   3'- uuGCCAUuAGUGUCAUgCugC-CGUUG- -5'
1638 3' -49.6 NC_001347.2 + 157990 0.67 0.998495
Target:  5'- cGCGGaGGagGCucgACGGCGGCAGCu -3'
miRNA:   3'- uUGCCaUUagUGucaUGCUGCCGUUG- -5'
1638 3' -49.6 NC_001347.2 + 66895 0.67 0.998159
Target:  5'- cACGGgccgggGAggaGCAGcugguguuucgauUGCGGCGGCAACg -3'
miRNA:   3'- uUGCCa-----UUag-UGUC-------------AUGCUGCCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.