miRNA display CGI


Results 1 - 20 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1638 5' -62.3 NC_001347.2 + 123041 0.65 0.792392
Target:  5'- aCC-CCGCCGgaaCACCGCCGggcuguaaaucuguCCACCcucaauaGCCu -3'
miRNA:   3'- -GGcGGCGGCg--GUGGUGGU--------------GGUGG-------UGG- -5'
1638 5' -62.3 NC_001347.2 + 110466 0.66 0.790717
Target:  5'- gCGCUGCCGCUggACCGCgugcccguuagcggaCugCACCucuuucagaGCCa -3'
miRNA:   3'- gGCGGCGGCGG--UGGUG---------------GugGUGG---------UGG- -5'
1638 5' -62.3 NC_001347.2 + 190026 0.66 0.787351
Target:  5'- gCGCgGCUuuGCaaucaCGCCGCUcgacggggACCGCCGCCg -3'
miRNA:   3'- gGCGgCGG--CG-----GUGGUGG--------UGGUGGUGG- -5'
1638 5' -62.3 NC_001347.2 + 90470 0.66 0.787351
Target:  5'- aCgGCC-UCGCagGCCACCAgCGCCAUa -3'
miRNA:   3'- -GgCGGcGGCGg-UGGUGGUgGUGGUGg -5'
1638 5' -62.3 NC_001347.2 + 56214 0.66 0.787351
Target:  5'- -aGCaCGauGcCCACCACCACCaguguGCCGCa -3'
miRNA:   3'- ggCG-GCggC-GGUGGUGGUGG-----UGGUGg -5'
1638 5' -62.3 NC_001347.2 + 54021 0.66 0.786506
Target:  5'- uUCGCgGgaUCGUCACCACCAUgACCcauucauugacacGCCa -3'
miRNA:   3'- -GGCGgC--GGCGGUGGUGGUGgUGG-------------UGG- -5'
1638 5' -62.3 NC_001347.2 + 1656 0.66 0.782267
Target:  5'- aCGCUGCUGCCucaGCCGgCGCUccgacagacguugcuGCgCGCCg -3'
miRNA:   3'- gGCGGCGGCGG---UGGUgGUGG---------------UG-GUGG- -5'
1638 5' -62.3 NC_001347.2 + 164844 0.66 0.781415
Target:  5'- uUCGCCGCaGCUguaggacggugguACCgcggacgaagaagagGCCGCCGCUAUCg -3'
miRNA:   3'- -GGCGGCGgCGG-------------UGG---------------UGGUGGUGGUGG- -5'
1638 5' -62.3 NC_001347.2 + 17625 0.66 0.778854
Target:  5'- -gGCgGCgCGUC-CCACCcCCcggGCCACCa -3'
miRNA:   3'- ggCGgCG-GCGGuGGUGGuGG---UGGUGG- -5'
1638 5' -62.3 NC_001347.2 + 113190 0.66 0.778854
Target:  5'- gCCGCCGgCGUgGCgGCCugACUGCgGCUg -3'
miRNA:   3'- -GGCGGCgGCGgUGgUGG--UGGUGgUGG- -5'
1638 5' -62.3 NC_001347.2 + 38473 0.66 0.778854
Target:  5'- gCGCaGCCcaGCCACCGCgcgggCAgCACCGCg -3'
miRNA:   3'- gGCGgCGG--CGGUGGUG-----GUgGUGGUGg -5'
1638 5' -62.3 NC_001347.2 + 208000 0.66 0.778854
Target:  5'- uUCGCCGaaCCGCguCUGgUACCGCUACUg -3'
miRNA:   3'- -GGCGGC--GGCGguGGUgGUGGUGGUGG- -5'
1638 5' -62.3 NC_001347.2 + 167885 0.66 0.778854
Target:  5'- gCCGCUGgCGUCACgCGCUugCAgaUUACCc -3'
miRNA:   3'- -GGCGGCgGCGGUG-GUGGugGU--GGUGG- -5'
1638 5' -62.3 NC_001347.2 + 51207 0.66 0.778854
Target:  5'- aCGCgGCguaCGUCACCGCgCuauuauCCACCAUCc -3'
miRNA:   3'- gGCGgCG---GCGGUGGUG-Gu-----GGUGGUGG- -5'
1638 5' -62.3 NC_001347.2 + 152231 0.66 0.778854
Target:  5'- gUGCUGCCGCgG-CGCUugCACUuggaGCCg -3'
miRNA:   3'- gGCGGCGGCGgUgGUGGugGUGG----UGG- -5'
1638 5' -62.3 NC_001347.2 + 63776 0.66 0.778854
Target:  5'- uUGCCGCUGUacaacgaauuCACCAgcuuUCGCCugcCCACCu -3'
miRNA:   3'- gGCGGCGGCG----------GUGGU----GGUGGu--GGUGG- -5'
1638 5' -62.3 NC_001347.2 + 210156 0.66 0.778854
Target:  5'- gUGCCGUCGCCGCaCugCGuucUCACuCGCg -3'
miRNA:   3'- gGCGGCGGCGGUG-GugGU---GGUG-GUGg -5'
1638 5' -62.3 NC_001347.2 + 178761 0.66 0.770246
Target:  5'- uCCG-CGCCGCCGa-GCCuGCCGuuGCCc -3'
miRNA:   3'- -GGCgGCGGCGGUggUGG-UGGUggUGG- -5'
1638 5' -62.3 NC_001347.2 + 198997 0.66 0.770246
Target:  5'- gUGCCGCgaUGCCGCaGCUcuucguccaGCCGCCGCa -3'
miRNA:   3'- gGCGGCG--GCGGUGgUGG---------UGGUGGUGg -5'
1638 5' -62.3 NC_001347.2 + 129603 0.66 0.770246
Target:  5'- aCC-CCGCCGaucucaagguCC-CCACCGCCuucCCGCa -3'
miRNA:   3'- -GGcGGCGGC----------GGuGGUGGUGGu--GGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.