miRNA display CGI


Results 1 - 20 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1638 5' -62.3 NC_001347.2 + 130910 1.13 0.000847
Target:  5'- gCCGCCGCCGCCACCACCACCACCACCg -3'
miRNA:   3'- -GGCGGCGGCGGUGGUGGUGGUGGUGG- -5'
1638 5' -62.3 NC_001347.2 + 89705 1.09 0.001488
Target:  5'- cCCGCCGCCGCCACCACUACCACCACCa -3'
miRNA:   3'- -GGCGGCGGCGGUGGUGGUGGUGGUGG- -5'
1638 5' -62.3 NC_001347.2 + 67657 1.08 0.001826
Target:  5'- gCCGCUGCCGCCGCCACCACCACCGCCa -3'
miRNA:   3'- -GGCGGCGGCGGUGGUGGUGGUGGUGG- -5'
1638 5' -62.3 NC_001347.2 + 68050 1.05 0.002896
Target:  5'- cCCGCCGCCGCCACCGCCACCACCAgCg -3'
miRNA:   3'- -GGCGGCGGCGGUGGUGGUGGUGGUgG- -5'
1638 5' -62.3 NC_001347.2 + 178803 0.97 0.010393
Target:  5'- cCCGCUGCCGCCGCCACCccuucguccuccGCCGCCACCa -3'
miRNA:   3'- -GGCGGCGGCGGUGGUGG------------UGGUGGUGG- -5'
1638 5' -62.3 NC_001347.2 + 90833 0.95 0.013307
Target:  5'- gCCGCUGCCGCCuaaccuccgcucgcACCACCGCCGCCGCCa -3'
miRNA:   3'- -GGCGGCGGCGG--------------UGGUGGUGGUGGUGG- -5'
1638 5' -62.3 NC_001347.2 + 66709 0.95 0.014846
Target:  5'- cCUGCCGCCGgcuguuucuaCCACCGCCACCACCGCCg -3'
miRNA:   3'- -GGCGGCGGC----------GGUGGUGGUGGUGGUGG- -5'
1638 5' -62.3 NC_001347.2 + 63924 0.95 0.015384
Target:  5'- aCCGCUGCCGCCGCCACgacaaacacuaccguCGCCACCACCg -3'
miRNA:   3'- -GGCGGCGGCGGUGGUG---------------GUGGUGGUGG- -5'
1638 5' -62.3 NC_001347.2 + 68075 0.93 0.018662
Target:  5'- nCGCCGCCGCCuCCACCACCACCGgCa -3'
miRNA:   3'- gGCGGCGGCGGuGGUGGUGGUGGUgG- -5'
1638 5' -62.3 NC_001347.2 + 106314 0.93 0.019142
Target:  5'- gCGCCGCCGCUcacuuuccucGCCACCACUACCACCa -3'
miRNA:   3'- gGCGGCGGCGG----------UGGUGGUGGUGGUGG- -5'
1638 5' -62.3 NC_001347.2 + 222749 0.92 0.021731
Target:  5'- cCCGCUGCCGCgGCCAUUGCCGCCGCCg -3'
miRNA:   3'- -GGCGGCGGCGgUGGUGGUGGUGGUGG- -5'
1638 5' -62.3 NC_001347.2 + 156642 0.92 0.022289
Target:  5'- gCGCCGCUGCCgggccucgGCCGCCGCCGCCACCc -3'
miRNA:   3'- gGCGGCGGCGG--------UGGUGGUGGUGGUGG- -5'
1638 5' -62.3 NC_001347.2 + 80851 0.91 0.025946
Target:  5'- gCGUCGCCcacGCCACUACCACCGCCGCCg -3'
miRNA:   3'- gGCGGCGG---CGGUGGUGGUGGUGGUGG- -5'
1638 5' -62.3 NC_001347.2 + 63104 0.91 0.026611
Target:  5'- gCCGCCGUgGCCGCCGCgGCCGCCGCUg -3'
miRNA:   3'- -GGCGGCGgCGGUGGUGgUGGUGGUGG- -5'
1638 5' -62.3 NC_001347.2 + 208211 0.9 0.029219
Target:  5'- cCCGCCGCUGCUcuuccucagagacgGCCGCCGCCGCUACCg -3'
miRNA:   3'- -GGCGGCGGCGG--------------UGGUGGUGGUGGUGG- -5'
1638 5' -62.3 NC_001347.2 + 67361 0.9 0.029441
Target:  5'- gCCGCCGUCGCCGCCGCCucggacuCCugCACCg -3'
miRNA:   3'- -GGCGGCGGCGGUGGUGGu------GGugGUGG- -5'
1638 5' -62.3 NC_001347.2 + 85985 0.9 0.032568
Target:  5'- -aGCCGCCGCCACCcgaACCGuCCGCCGCCg -3'
miRNA:   3'- ggCGGCGGCGGUGG---UGGU-GGUGGUGG- -5'
1638 5' -62.3 NC_001347.2 + 28003 0.89 0.034251
Target:  5'- gUCGCCGCCGUCACCACCGCCGauccgucgagUCACCg -3'
miRNA:   3'- -GGCGGCGGCGGUGGUGGUGGU----------GGUGG- -5'
1638 5' -62.3 NC_001347.2 + 199593 0.89 0.035749
Target:  5'- aCCGCCGCgcugcuguuaucguCGCCACCGCCGCCGgCGCCg -3'
miRNA:   3'- -GGCGGCG--------------GCGGUGGUGGUGGUgGUGG- -5'
1638 5' -62.3 NC_001347.2 + 69804 0.88 0.043815
Target:  5'- uUGCCuugaagucucucCCGCCACCACCACCACCGCCg -3'
miRNA:   3'- gGCGGc-----------GGCGGUGGUGGUGGUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.