miRNA display CGI


Results 21 - 40 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1638 5' -62.3 NC_001347.2 + 12354 0.66 0.770246
Target:  5'- gCGCaCGCCGCUGCUA--ACCACgcaACCg -3'
miRNA:   3'- gGCG-GCGGCGGUGGUggUGGUGg--UGG- -5'
1638 5' -62.3 NC_001347.2 + 79629 0.66 0.770246
Target:  5'- -aGCUucgGCCGgCugCugCACCACagCGCCa -3'
miRNA:   3'- ggCGG---CGGCgGugGugGUGGUG--GUGG- -5'
1638 5' -62.3 NC_001347.2 + 65235 0.66 0.770246
Target:  5'- gUGCCGCgGCUACgACCucaCGCgACUg -3'
miRNA:   3'- gGCGGCGgCGGUGgUGGug-GUGgUGG- -5'
1638 5' -62.3 NC_001347.2 + 129603 0.66 0.770246
Target:  5'- aCC-CCGCCGaucucaagguCC-CCACCGCCuucCCGCa -3'
miRNA:   3'- -GGcGGCGGC----------GGuGGUGGUGGu--GGUGg -5'
1638 5' -62.3 NC_001347.2 + 198997 0.66 0.770246
Target:  5'- gUGCCGCgaUGCCGCaGCUcuucguccaGCCGCCGCa -3'
miRNA:   3'- gGCGGCG--GCGGUGgUGG---------UGGUGGUGg -5'
1638 5' -62.3 NC_001347.2 + 178761 0.66 0.770246
Target:  5'- uCCG-CGCCGCCGa-GCCuGCCGuuGCCc -3'
miRNA:   3'- -GGCgGCGGCGGUggUGG-UGGUggUGG- -5'
1638 5' -62.3 NC_001347.2 + 135442 0.66 0.770246
Target:  5'- aCCGgaGCCGCCGagagggaGCCGCCGCgagACCc -3'
miRNA:   3'- -GGCggCGGCGGUgg-----UGGUGGUGg--UGG- -5'
1638 5' -62.3 NC_001347.2 + 189531 0.66 0.769379
Target:  5'- aCGCCGUCGacgguacCCGCCACgCugUugCaACCu -3'
miRNA:   3'- gGCGGCGGC-------GGUGGUG-GugGugG-UGG- -5'
1638 5' -62.3 NC_001347.2 + 184816 0.66 0.765031
Target:  5'- uUCGCCGCagcguuuagucagcuCGUCGCgCGCguaGCuCACCACCu -3'
miRNA:   3'- -GGCGGCG---------------GCGGUG-GUGg--UG-GUGGUGG- -5'
1638 5' -62.3 NC_001347.2 + 23256 0.66 0.761533
Target:  5'- aCgGCCugGgCGCCcCCACCcCCGCgACCc -3'
miRNA:   3'- -GgCGG--CgGCGGuGGUGGuGGUGgUGG- -5'
1638 5' -62.3 NC_001347.2 + 22422 0.66 0.761533
Target:  5'- aCGCgGUuuCGCCGaguuUCGcCCACaCACCACCa -3'
miRNA:   3'- gGCGgCG--GCGGU----GGU-GGUG-GUGGUGG- -5'
1638 5' -62.3 NC_001347.2 + 24013 0.66 0.761533
Target:  5'- aUCGUCaCgCGCCACCgggGCCACCaacGCgGCCu -3'
miRNA:   3'- -GGCGGcG-GCGGUGG---UGGUGG---UGgUGG- -5'
1638 5' -62.3 NC_001347.2 + 210323 0.66 0.761533
Target:  5'- uUCGCCGCCGUUguucuuCCACCAgaUACUGCa -3'
miRNA:   3'- -GGCGGCGGCGGu-----GGUGGUg-GUGGUGg -5'
1638 5' -62.3 NC_001347.2 + 81484 0.66 0.761533
Target:  5'- gCGUCGUCGCUcgGCgGgUGCgCACCGCCg -3'
miRNA:   3'- gGCGGCGGCGG--UGgUgGUG-GUGGUGG- -5'
1638 5' -62.3 NC_001347.2 + 153777 0.66 0.761533
Target:  5'- gCGCCGUCGaCGCCGCUcagGCCGugguaguccgagUCGCCu -3'
miRNA:   3'- gGCGGCGGCgGUGGUGG---UGGU------------GGUGG- -5'
1638 5' -62.3 NC_001347.2 + 189983 0.66 0.761533
Target:  5'- gCGCCGCCuGUgGCCuCCcCCuCCAUCc -3'
miRNA:   3'- gGCGGCGG-CGgUGGuGGuGGuGGUGG- -5'
1638 5' -62.3 NC_001347.2 + 124385 0.66 0.752723
Target:  5'- aCCaCCGuCUGCaucuCC-CCACaCACCACCg -3'
miRNA:   3'- -GGcGGC-GGCGgu--GGuGGUG-GUGGUGG- -5'
1638 5' -62.3 NC_001347.2 + 159286 0.66 0.752723
Target:  5'- gUGCUGgCGgCGCCgggcGCCACgGCCACa -3'
miRNA:   3'- gGCGGCgGCgGUGG----UGGUGgUGGUGg -5'
1638 5' -62.3 NC_001347.2 + 895 0.66 0.752723
Target:  5'- aUGUCGCCG-CGCC-CC-CCGCC-CCu -3'
miRNA:   3'- gGCGGCGGCgGUGGuGGuGGUGGuGG- -5'
1638 5' -62.3 NC_001347.2 + 78634 0.66 0.752723
Target:  5'- gCGCgCGCgaCGCCGaacuCUACCACCugC-CCg -3'
miRNA:   3'- gGCG-GCG--GCGGU----GGUGGUGGugGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.