miRNA display CGI


Results 1 - 20 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1638 5' -62.3 NC_001347.2 + 461 0.74 0.342195
Target:  5'- uUCGCCGUCGCCGuCCuCCG-CACCACa -3'
miRNA:   3'- -GGCGGCGGCGGU-GGuGGUgGUGGUGg -5'
1638 5' -62.3 NC_001347.2 + 895 0.66 0.752723
Target:  5'- aUGUCGCCG-CGCC-CC-CCGCC-CCu -3'
miRNA:   3'- gGCGGCGGCgGUGGuGGuGGUGGuGG- -5'
1638 5' -62.3 NC_001347.2 + 1018 0.67 0.715737
Target:  5'- gUGCUGCgGCUacgacgacgccggGCCACgGCguCCACCg -3'
miRNA:   3'- gGCGGCGgCGG-------------UGGUGgUGguGGUGG- -5'
1638 5' -62.3 NC_001347.2 + 1656 0.66 0.782267
Target:  5'- aCGCUGCUGCCucaGCCGgCGCUccgacagacguugcuGCgCGCCg -3'
miRNA:   3'- gGCGGCGGCGG---UGGUgGUGG---------------UG-GUGG- -5'
1638 5' -62.3 NC_001347.2 + 2396 0.72 0.426088
Target:  5'- cCCGCCGCCGaggccgCGCgGCgGCUGCUGCCc -3'
miRNA:   3'- -GGCGGCGGCg-----GUGgUGgUGGUGGUGG- -5'
1638 5' -62.3 NC_001347.2 + 2451 0.68 0.650498
Target:  5'- -aGCgGCCGCgcugggaCGCgCugCACCugCACCc -3'
miRNA:   3'- ggCGgCGGCG-------GUG-GugGUGGugGUGG- -5'
1638 5' -62.3 NC_001347.2 + 4148 0.73 0.371281
Target:  5'- aCGCCGCCGUgACCcauACCGcagcucggacCCAUCGCCc -3'
miRNA:   3'- gGCGGCGGCGgUGG---UGGU----------GGUGGUGG- -5'
1638 5' -62.3 NC_001347.2 + 5779 0.72 0.417965
Target:  5'- aCCGCCGCaucuGUCGCCGCCAauUgGCgGCCc -3'
miRNA:   3'- -GGCGGCGg---CGGUGGUGGU--GgUGgUGG- -5'
1638 5' -62.3 NC_001347.2 + 5875 0.69 0.594932
Target:  5'- cUCGCCaGUCGCCGCaguCgCACCACagGCCg -3'
miRNA:   3'- -GGCGG-CGGCGGUGgu-G-GUGGUGg-UGG- -5'
1638 5' -62.3 NC_001347.2 + 8868 0.73 0.402008
Target:  5'- uCCaaaCGUgaGCCACCACCACCcacuguagaGCCACCa -3'
miRNA:   3'- -GGcg-GCGg-CGGUGGUGGUGG---------UGGUGG- -5'
1638 5' -62.3 NC_001347.2 + 11776 0.68 0.679602
Target:  5'- gCUGCCaaguGCCGCUccacGCCGCggCACCAUgCGCCa -3'
miRNA:   3'- -GGCGG----CGGCGG----UGGUG--GUGGUG-GUGG- -5'
1638 5' -62.3 NC_001347.2 + 12354 0.66 0.770246
Target:  5'- gCGCaCGCCGCUGCUA--ACCACgcaACCg -3'
miRNA:   3'- gGCG-GCGGCGGUGGUggUGGUGg--UGG- -5'
1638 5' -62.3 NC_001347.2 + 13522 0.7 0.521045
Target:  5'- cCCGCCggGCgGCCcggGCCGCCgugcuggaggGCCGCC-CCa -3'
miRNA:   3'- -GGCGG--CGgCGG---UGGUGG----------UGGUGGuGG- -5'
1638 5' -62.3 NC_001347.2 + 16710 0.7 0.530113
Target:  5'- aCCGCuCGCCGCC-CCugCAgCGuCUAgCCg -3'
miRNA:   3'- -GGCG-GCGGCGGuGGugGUgGU-GGU-GG- -5'
1638 5' -62.3 NC_001347.2 + 16807 0.67 0.73484
Target:  5'- gCGUCGCCGCUACgaacacggucUACgGCgCGCgGCCa -3'
miRNA:   3'- gGCGGCGGCGGUG----------GUGgUG-GUGgUGG- -5'
1638 5' -62.3 NC_001347.2 + 17125 0.78 0.193529
Target:  5'- gUCGuCCGCCGUCgGCCGCCGCCcauGCCACg -3'
miRNA:   3'- -GGC-GGCGGCGG-UGGUGGUGG---UGGUGg -5'
1638 5' -62.3 NC_001347.2 + 17330 0.67 0.688932
Target:  5'- aCGCgGuuGCCGCgCguaugGCCGCCgGCCACg -3'
miRNA:   3'- gGCGgCggCGGUG-G-----UGGUGG-UGGUGg -5'
1638 5' -62.3 NC_001347.2 + 17625 0.66 0.778854
Target:  5'- -gGCgGCgCGUC-CCACCcCCcggGCCACCa -3'
miRNA:   3'- ggCGgCG-GCGGuGGUGGuGG---UGGUGG- -5'
1638 5' -62.3 NC_001347.2 + 17730 0.71 0.494224
Target:  5'- uCCGCCGgcauguCC-CUACuCACCaaaGCCGCCGCCg -3'
miRNA:   3'- -GGCGGC------GGcGGUG-GUGG---UGGUGGUGG- -5'
1638 5' -62.3 NC_001347.2 + 17912 0.68 0.633532
Target:  5'- uCCGgCGCUGagaaccuacgugcaaCGCCACCAaggaACCACCg -3'
miRNA:   3'- -GGCgGCGGCg--------------GUGGUGGUgg--UGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.