miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16380 3' -54.5 NC_004084.1 + 22566 0.66 0.811903
Target:  5'- -aCGA-GCAuguCCcCGGCGUcgccggggucGGCGGCCg -3'
miRNA:   3'- caGCUaUGUu--GGaGCCGCA----------CCGCUGG- -5'
16380 3' -54.5 NC_004084.1 + 35938 0.66 0.809095
Target:  5'- uUCGAUGuucgacucggcguuCGGCCgaUCGGCGUcuggGGgGGCCu -3'
miRNA:   3'- cAGCUAU--------------GUUGG--AGCCGCA----CCgCUGG- -5'
16380 3' -54.5 NC_004084.1 + 11719 0.66 0.80627
Target:  5'- cGUCGAcgugcuguacugguuUACuucACCgaacUCGGCGUccGGCGGCUc -3'
miRNA:   3'- -CAGCU---------------AUGu--UGG----AGCCGCA--CCGCUGG- -5'
16380 3' -54.5 NC_004084.1 + 50524 0.66 0.803429
Target:  5'- cGUCGAgagccccgaucgcgaGCAGCUUCGcCG-GGCGAUCg -3'
miRNA:   3'- -CAGCUa--------------UGUUGGAGCcGCaCCGCUGG- -5'
16380 3' -54.5 NC_004084.1 + 30274 0.66 0.802479
Target:  5'- uUCGG-ACGAa-UCGGCGUGGUcgggaaGGCCg -3'
miRNA:   3'- cAGCUaUGUUggAGCCGCACCG------CUGG- -5'
16380 3' -54.5 NC_004084.1 + 7431 0.66 0.783115
Target:  5'- -gCGAUGCcgacgguggcgaGACCUCGGaGUccgacGGCGACUc -3'
miRNA:   3'- caGCUAUG------------UUGGAGCCgCA-----CCGCUGG- -5'
16380 3' -54.5 NC_004084.1 + 52698 0.66 0.773196
Target:  5'- aUCGAg--GACCUCGGCccGaGCGACg -3'
miRNA:   3'- cAGCUaugUUGGAGCCGcaC-CGCUGg -5'
16380 3' -54.5 NC_004084.1 + 35540 0.66 0.773196
Target:  5'- aUCGAg--GACCUCGGC--GGCGaguGCCg -3'
miRNA:   3'- cAGCUaugUUGGAGCCGcaCCGC---UGG- -5'
16380 3' -54.5 NC_004084.1 + 3245 0.66 0.772197
Target:  5'- cGUCGAcgacgucUACggUCggCGGCGUGuaGAUCg -3'
miRNA:   3'- -CAGCU-------AUGuuGGa-GCCGCACcgCUGG- -5'
16380 3' -54.5 NC_004084.1 + 52370 0.66 0.770192
Target:  5'- gGUCGAUGCGauuccgcgaccagcGCCggGGUuccUGGCGAUCg -3'
miRNA:   3'- -CAGCUAUGU--------------UGGagCCGc--ACCGCUGG- -5'
16380 3' -54.5 NC_004084.1 + 11897 0.67 0.756011
Target:  5'- uUCGAUGCcgagaucgucaucaaCUCGGCGaccGGCGACg -3'
miRNA:   3'- cAGCUAUGuug------------GAGCCGCa--CCGCUGg -5'
16380 3' -54.5 NC_004084.1 + 9830 0.67 0.742623
Target:  5'- cUCGAUcCAGCacuacgaggUCGGCGagGGCGGCUc -3'
miRNA:   3'- cAGCUAuGUUGg--------AGCCGCa-CCGCUGG- -5'
16380 3' -54.5 NC_004084.1 + 2231 0.67 0.742623
Target:  5'- -gUGAUGaaguCCUCGGuCGUcuGGUGACCu -3'
miRNA:   3'- caGCUAUguu-GGAGCC-GCA--CCGCUGG- -5'
16380 3' -54.5 NC_004084.1 + 45602 0.67 0.742623
Target:  5'- aUCccgGCGuCCUCGGaGUGGcCGACCg -3'
miRNA:   3'- cAGcuaUGUuGGAGCCgCACC-GCUGG- -5'
16380 3' -54.5 NC_004084.1 + 22281 0.67 0.742623
Target:  5'- aGUCGAgGCAacgcACCUC-GCGUucGGCGAUg -3'
miRNA:   3'- -CAGCUaUGU----UGGAGcCGCA--CCGCUGg -5'
16380 3' -54.5 NC_004084.1 + 32265 0.67 0.71106
Target:  5'- cGUCGAcugcccgccCAACCUgGGCGUGcucaccgacaacGCGAUCg -3'
miRNA:   3'- -CAGCUau-------GUUGGAgCCGCAC------------CGCUGG- -5'
16380 3' -54.5 NC_004084.1 + 53256 0.68 0.700371
Target:  5'- cGUCGAcgGCGacgagaucggGCCg-GGCGacguccUGGCGACCa -3'
miRNA:   3'- -CAGCUa-UGU----------UGGagCCGC------ACCGCUGG- -5'
16380 3' -54.5 NC_004084.1 + 21880 0.68 0.700371
Target:  5'- cGUCGAUACcguugucGCgaUCGGCGUcucGGuCGGCCu -3'
miRNA:   3'- -CAGCUAUGu------UGg-AGCCGCA---CC-GCUGG- -5'
16380 3' -54.5 NC_004084.1 + 47624 0.68 0.696076
Target:  5'- gGUCGAagugacgaaccucacCGACUUCGGCGUcgaggucGGCGACg -3'
miRNA:   3'- -CAGCUau-------------GUUGGAGCCGCA-------CCGCUGg -5'
16380 3' -54.5 NC_004084.1 + 2173 0.68 0.689616
Target:  5'- cGUCGAUGCAGuCgCUCGaGCGccgGGaCGGCa -3'
miRNA:   3'- -CAGCUAUGUU-G-GAGC-CGCa--CC-GCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.