miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16380 3' -54.5 NC_004084.1 + 5127 1.13 0.000786
Target:  5'- cGUCGAUACAACCUCGGCGUGGCGACCg -3'
miRNA:   3'- -CAGCUAUGUUGGAGCCGCACCGCUGG- -5'
16380 3' -54.5 NC_004084.1 + 44670 0.74 0.363871
Target:  5'- cUCGGcgAUGACCUCuGCGUGGCaGCCa -3'
miRNA:   3'- cAGCUa-UGUUGGAGcCGCACCGcUGG- -5'
16380 3' -54.5 NC_004084.1 + 20691 0.73 0.398239
Target:  5'- aUCGAUGCGgugACCUCGGUcUGGCccuccuggaggauGACCu -3'
miRNA:   3'- cAGCUAUGU---UGGAGCCGcACCG-------------CUGG- -5'
16380 3' -54.5 NC_004084.1 + 52835 0.73 0.417588
Target:  5'- --aGAUGCucucGGCgUUCGGCGcUGGCGACCu -3'
miRNA:   3'- cagCUAUG----UUG-GAGCCGC-ACCGCUGG- -5'
16380 3' -54.5 NC_004084.1 + 28184 0.72 0.4308
Target:  5'- cGUCGAgGCGcaccccgaaccguugACCgUCGGCGaGGUGGCCg -3'
miRNA:   3'- -CAGCUaUGU---------------UGG-AGCCGCaCCGCUGG- -5'
16380 3' -54.5 NC_004084.1 + 3137 0.71 0.496179
Target:  5'- cGUCGAcgaguuCCUCGaGgGUGGCGAUCa -3'
miRNA:   3'- -CAGCUauguu-GGAGC-CgCACCGCUGG- -5'
16380 3' -54.5 NC_004084.1 + 46968 0.71 0.506482
Target:  5'- ----cUGCAGCCgccggGGCGUGGCGGCa -3'
miRNA:   3'- cagcuAUGUUGGag---CCGCACCGCUGg -5'
16380 3' -54.5 NC_004084.1 + 17261 0.7 0.547472
Target:  5'- -cCGGUGCAGucggcgaugcCCUCGGUggaggcgGUGGCGGCg -3'
miRNA:   3'- caGCUAUGUU----------GGAGCCG-------CACCGCUGg -5'
16380 3' -54.5 NC_004084.1 + 12037 0.7 0.580781
Target:  5'- cGUCGAUuCGACCUgaagGGCGUcGGUGuCCu -3'
miRNA:   3'- -CAGCUAuGUUGGAg---CCGCA-CCGCuGG- -5'
16380 3' -54.5 NC_004084.1 + 49325 0.69 0.602499
Target:  5'- cGUCGAcAUcGCCcggUCGGCGUaccgcGGCGAUCu -3'
miRNA:   3'- -CAGCUaUGuUGG---AGCCGCA-----CCGCUGG- -5'
16380 3' -54.5 NC_004084.1 + 1978 0.69 0.6134
Target:  5'- uGUCGGU-CGGCCccauccccgacUUGGCGUGGCaGuCCa -3'
miRNA:   3'- -CAGCUAuGUUGG-----------AGCCGCACCG-CuGG- -5'
16380 3' -54.5 NC_004084.1 + 2827 0.69 0.624317
Target:  5'- -aCGAccuCAACCUCGGCGUccgcGGUgGAUCg -3'
miRNA:   3'- caGCUau-GUUGGAGCCGCA----CCG-CUGG- -5'
16380 3' -54.5 NC_004084.1 + 30767 0.69 0.624317
Target:  5'- aGUCGA-GCGACCUCcucgaGGCGUacGCGAUCc -3'
miRNA:   3'- -CAGCUaUGUUGGAG-----CCGCAc-CGCUGG- -5'
16380 3' -54.5 NC_004084.1 + 39236 0.69 0.624317
Target:  5'- cGUCGucUACGACaUCGGCaagGGCGGCg -3'
miRNA:   3'- -CAGCu-AUGUUGgAGCCGca-CCGCUGg -5'
16380 3' -54.5 NC_004084.1 + 9866 0.68 0.646161
Target:  5'- -aCGcgGgAGCC-CGGCGgaagagucGGCGACCg -3'
miRNA:   3'- caGCuaUgUUGGaGCCGCa-------CCGCUGG- -5'
16380 3' -54.5 NC_004084.1 + 47351 0.68 0.646161
Target:  5'- cGUCGu--CGACCUCGuaGUaGGCG-CCg -3'
miRNA:   3'- -CAGCuauGUUGGAGCcgCA-CCGCuGG- -5'
16380 3' -54.5 NC_004084.1 + 46412 0.68 0.667955
Target:  5'- cGUCG-UACGA-CUCGGCGaaGGUGACa -3'
miRNA:   3'- -CAGCuAUGUUgGAGCCGCa-CCGCUGg -5'
16380 3' -54.5 NC_004084.1 + 8721 0.68 0.667955
Target:  5'- -gCGAggacUACAGCCUCGGUGUucuCGAUCg -3'
miRNA:   3'- caGCU----AUGUUGGAGCCGCAcc-GCUGG- -5'
16380 3' -54.5 NC_004084.1 + 2173 0.68 0.689616
Target:  5'- cGUCGAUGCAGuCgCUCGaGCGccgGGaCGGCa -3'
miRNA:   3'- -CAGCUAUGUU-G-GAGC-CGCa--CC-GCUGg -5'
16380 3' -54.5 NC_004084.1 + 47624 0.68 0.696076
Target:  5'- gGUCGAagugacgaaccucacCGACUUCGGCGUcgaggucGGCGACg -3'
miRNA:   3'- -CAGCUau-------------GUUGGAGCCGCA-------CCGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.