miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16380 3' -54.5 NC_004084.1 + 1978 0.69 0.6134
Target:  5'- uGUCGGU-CGGCCccauccccgacUUGGCGUGGCaGuCCa -3'
miRNA:   3'- -CAGCUAuGUUGG-----------AGCCGCACCG-CuGG- -5'
16380 3' -54.5 NC_004084.1 + 2173 0.68 0.689616
Target:  5'- cGUCGAUGCAGuCgCUCGaGCGccgGGaCGGCa -3'
miRNA:   3'- -CAGCUAUGUU-G-GAGC-CGCa--CC-GCUGg -5'
16380 3' -54.5 NC_004084.1 + 2231 0.67 0.742623
Target:  5'- -gUGAUGaaguCCUCGGuCGUcuGGUGACCu -3'
miRNA:   3'- caGCUAUguu-GGAGCC-GCA--CCGCUGG- -5'
16380 3' -54.5 NC_004084.1 + 2827 0.69 0.624317
Target:  5'- -aCGAccuCAACCUCGGCGUccgcGGUgGAUCg -3'
miRNA:   3'- caGCUau-GUUGGAGCCGCA----CCG-CUGG- -5'
16380 3' -54.5 NC_004084.1 + 3137 0.71 0.496179
Target:  5'- cGUCGAcgaguuCCUCGaGgGUGGCGAUCa -3'
miRNA:   3'- -CAGCUauguu-GGAGC-CgCACCGCUGG- -5'
16380 3' -54.5 NC_004084.1 + 3245 0.66 0.772197
Target:  5'- cGUCGAcgacgucUACggUCggCGGCGUGuaGAUCg -3'
miRNA:   3'- -CAGCU-------AUGuuGGa-GCCGCACcgCUGG- -5'
16380 3' -54.5 NC_004084.1 + 5127 1.13 0.000786
Target:  5'- cGUCGAUACAACCUCGGCGUGGCGACCg -3'
miRNA:   3'- -CAGCUAUGUUGGAGCCGCACCGCUGG- -5'
16380 3' -54.5 NC_004084.1 + 7431 0.66 0.783115
Target:  5'- -gCGAUGCcgacgguggcgaGACCUCGGaGUccgacGGCGACUc -3'
miRNA:   3'- caGCUAUG------------UUGGAGCCgCA-----CCGCUGG- -5'
16380 3' -54.5 NC_004084.1 + 8721 0.68 0.667955
Target:  5'- -gCGAggacUACAGCCUCGGUGUucuCGAUCg -3'
miRNA:   3'- caGCU----AUGUUGGAGCCGCAcc-GCUGG- -5'
16380 3' -54.5 NC_004084.1 + 9830 0.67 0.742623
Target:  5'- cUCGAUcCAGCacuacgaggUCGGCGagGGCGGCUc -3'
miRNA:   3'- cAGCUAuGUUGg--------AGCCGCa-CCGCUGG- -5'
16380 3' -54.5 NC_004084.1 + 9866 0.68 0.646161
Target:  5'- -aCGcgGgAGCC-CGGCGgaagagucGGCGACCg -3'
miRNA:   3'- caGCuaUgUUGGaGCCGCa-------CCGCUGG- -5'
16380 3' -54.5 NC_004084.1 + 11719 0.66 0.80627
Target:  5'- cGUCGAcgugcuguacugguuUACuucACCgaacUCGGCGUccGGCGGCUc -3'
miRNA:   3'- -CAGCU---------------AUGu--UGG----AGCCGCA--CCGCUGG- -5'
16380 3' -54.5 NC_004084.1 + 11897 0.67 0.756011
Target:  5'- uUCGAUGCcgagaucgucaucaaCUCGGCGaccGGCGACg -3'
miRNA:   3'- cAGCUAUGuug------------GAGCCGCa--CCGCUGg -5'
16380 3' -54.5 NC_004084.1 + 12037 0.7 0.580781
Target:  5'- cGUCGAUuCGACCUgaagGGCGUcGGUGuCCu -3'
miRNA:   3'- -CAGCUAuGUUGGAg---CCGCA-CCGCuGG- -5'
16380 3' -54.5 NC_004084.1 + 17261 0.7 0.547472
Target:  5'- -cCGGUGCAGucggcgaugcCCUCGGUggaggcgGUGGCGGCg -3'
miRNA:   3'- caGCUAUGUU----------GGAGCCG-------CACCGCUGg -5'
16380 3' -54.5 NC_004084.1 + 20691 0.73 0.398239
Target:  5'- aUCGAUGCGgugACCUCGGUcUGGCccuccuggaggauGACCu -3'
miRNA:   3'- cAGCUAUGU---UGGAGCCGcACCG-------------CUGG- -5'
16380 3' -54.5 NC_004084.1 + 21880 0.68 0.700371
Target:  5'- cGUCGAUACcguugucGCgaUCGGCGUcucGGuCGGCCu -3'
miRNA:   3'- -CAGCUAUGu------UGg-AGCCGCA---CC-GCUGG- -5'
16380 3' -54.5 NC_004084.1 + 22281 0.67 0.742623
Target:  5'- aGUCGAgGCAacgcACCUC-GCGUucGGCGAUg -3'
miRNA:   3'- -CAGCUaUGU----UGGAGcCGCA--CCGCUGg -5'
16380 3' -54.5 NC_004084.1 + 22566 0.66 0.811903
Target:  5'- -aCGA-GCAuguCCcCGGCGUcgccggggucGGCGGCCg -3'
miRNA:   3'- caGCUaUGUu--GGaGCCGCA----------CCGCUGG- -5'
16380 3' -54.5 NC_004084.1 + 28184 0.72 0.4308
Target:  5'- cGUCGAgGCGcaccccgaaccguugACCgUCGGCGaGGUGGCCg -3'
miRNA:   3'- -CAGCUaUGU---------------UGG-AGCCGCaCCGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.