Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16380 | 5' | -54.7 | NC_004084.1 | + | 20406 | 0.68 | 0.653814 |
Target: 5'- gUGAGGCgcuugauaaacagcuGGCGCUCGcuggcuucAGUCGucaaccgucucaGUCGGCGa -3' miRNA: 3'- -ACUCCG---------------UCGUGAGC--------UCAGC------------UAGCUGC- -5' |
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16380 | 5' | -54.7 | NC_004084.1 | + | 55377 | 0.68 | 0.649438 |
Target: 5'- aGAGGgAGUuCUCuGAGcaagCGAUCGACa -3' miRNA: 3'- aCUCCgUCGuGAG-CUCa---GCUAGCUGc -5' |
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16380 | 5' | -54.7 | NC_004084.1 | + | 8767 | 0.68 | 0.649438 |
Target: 5'- cGAGGUcuccucuucgaGGUGCUCGAGUgGGUCGcCc -3' miRNA: 3'- aCUCCG-----------UCGUGAGCUCAgCUAGCuGc -5' |
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16380 | 5' | -54.7 | NC_004084.1 | + | 20012 | 0.68 | 0.638489 |
Target: 5'- cGGGGaauccgauCGGCGCUCGAGgacgaCGAUCG-CGu -3' miRNA: 3'- aCUCC--------GUCGUGAGCUCa----GCUAGCuGC- -5' |
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16380 | 5' | -54.7 | NC_004084.1 | + | 57687 | 0.68 | 0.627534 |
Target: 5'- cGAGGCGGCGuauaUCGAGggaCGAgaCGAUGa -3' miRNA: 3'- aCUCCGUCGUg---AGCUCa--GCUa-GCUGC- -5' |
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16380 | 5' | -54.7 | NC_004084.1 | + | 17188 | 0.68 | 0.627534 |
Target: 5'- gGAGGCacauugucgucAGCcCUCGAGUCGAcgcUCGGu- -3' miRNA: 3'- aCUCCG-----------UCGuGAGCUCAGCU---AGCUgc -5' |
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16380 | 5' | -54.7 | NC_004084.1 | + | 57899 | 0.69 | 0.605646 |
Target: 5'- gUGAGGaC-GCcCUCGAGUUGAUCGuuGa -3' miRNA: 3'- -ACUCC-GuCGuGAGCUCAGCUAGCugC- -5' |
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16380 | 5' | -54.7 | NC_004084.1 | + | 4289 | 0.69 | 0.605646 |
Target: 5'- cGAccGuCAGCgGCUCGAGUCGGaucUCGACGu -3' miRNA: 3'- aCU--CcGUCG-UGAGCUCAGCU---AGCUGC- -5' |
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16380 | 5' | -54.7 | NC_004084.1 | + | 27468 | 0.69 | 0.583848 |
Target: 5'- aGAcGGuCGGCGucCUCGAGcUCGAcgUCGACGa -3' miRNA: 3'- aCU-CC-GUCGU--GAGCUC-AGCU--AGCUGC- -5' |
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16380 | 5' | -54.7 | NC_004084.1 | + | 11649 | 0.7 | 0.50921 |
Target: 5'- ----aCAGCACgUCGAcGUCGGUCGGCGa -3' miRNA: 3'- acuccGUCGUG-AGCU-CAGCUAGCUGC- -5' |
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16380 | 5' | -54.7 | NC_004084.1 | + | 54398 | 0.7 | 0.50921 |
Target: 5'- cGGuGCAGCGuCUCGAuGUCGAUcaCGACGu -3' miRNA: 3'- aCUcCGUCGU-GAGCU-CAGCUA--GCUGC- -5' |
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16380 | 5' | -54.7 | NC_004084.1 | + | 41345 | 0.71 | 0.468372 |
Target: 5'- cUGAGGCAGCGauaucCGAaaucGUCG-UCGACGa -3' miRNA: 3'- -ACUCCGUCGUga---GCU----CAGCuAGCUGC- -5' |
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16380 | 5' | -54.7 | NC_004084.1 | + | 47435 | 0.72 | 0.442748 |
Target: 5'- aGGGGCGGCcgccgacgaacauguGCUUGAgGUCGG-CGACGa -3' miRNA: 3'- aCUCCGUCG---------------UGAGCU-CAGCUaGCUGC- -5' |
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16380 | 5' | -54.7 | NC_004084.1 | + | 57461 | 0.72 | 0.438876 |
Target: 5'- gGGGGC-GCGCUCGAGUUcgccgaGGUCGAa- -3' miRNA: 3'- aCUCCGuCGUGAGCUCAG------CUAGCUgc -5' |
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16380 | 5' | -54.7 | NC_004084.1 | + | 39827 | 0.72 | 0.410471 |
Target: 5'- aGAGuCaugauGGCGCUCGAGUCcAUCGGCGg -3' miRNA: 3'- aCUCcG-----UCGUGAGCUCAGcUAGCUGC- -5' |
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16380 | 5' | -54.7 | NC_004084.1 | + | 8392 | 0.73 | 0.392181 |
Target: 5'- cGAGcGCGGUACuUCGAGUCGAggcccgCGAUc -3' miRNA: 3'- aCUC-CGUCGUG-AGCUCAGCUa-----GCUGc -5' |
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16380 | 5' | -54.7 | NC_004084.1 | + | 21324 | 0.74 | 0.332485 |
Target: 5'- cGAGGCAGaC-CUCGAgGUCGGUacUGACGa -3' miRNA: 3'- aCUCCGUC-GuGAGCU-CAGCUA--GCUGC- -5' |
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16380 | 5' | -54.7 | NC_004084.1 | + | 5201 | 0.75 | 0.286846 |
Target: 5'- cGAGGCGGCaggcagcacGCUCGAGaCGAUC-ACGg -3' miRNA: 3'- aCUCCGUCG---------UGAGCUCaGCUAGcUGC- -5' |
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16380 | 5' | -54.7 | NC_004084.1 | + | 5164 | 1.09 | 0.001251 |
Target: 5'- cUGAGGCAGCACUCGAGUCGAUCGACGa -3' miRNA: 3'- -ACUCCGUCGUGAGCUCAGCUAGCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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