miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16381 3' -49.3 NC_004084.1 + 10709 0.66 0.971396
Target:  5'- uGUCGGUGAGGA---GA-CGCGAguugUCGa -3'
miRNA:   3'- gUAGCCACUUCUuacCUaGCGCU----AGC- -5'
16381 3' -49.3 NC_004084.1 + 39247 0.66 0.967454
Target:  5'- aCAUCGGcaagggcggcggGAAGAugGUGG-UCGuCGAUCGc -3'
miRNA:   3'- -GUAGCCa-----------CUUCU--UACCuAGC-GCUAGC- -5'
16381 3' -49.3 NC_004084.1 + 54873 0.67 0.956796
Target:  5'- uCAUCGG-GAcu-AUGGAggGCGAUCa -3'
miRNA:   3'- -GUAGCCaCUucuUACCUagCGCUAGc -5'
16381 3' -49.3 NC_004084.1 + 3735 0.67 0.952472
Target:  5'- cCAUCGGUcuGGGugaGGAUCuCGAUCGu -3'
miRNA:   3'- -GUAGCCAcuUCUua-CCUAGcGCUAGC- -5'
16381 3' -49.3 NC_004084.1 + 17236 0.67 0.947866
Target:  5'- -cUCGGUGAAGcagcaGGAUCuGCGGcCGg -3'
miRNA:   3'- guAGCCACUUCuua--CCUAG-CGCUaGC- -5'
16381 3' -49.3 NC_004084.1 + 35212 0.67 0.937792
Target:  5'- uCGUCGG-GAucGAGccgacGAUCGCGAUCGa -3'
miRNA:   3'- -GUAGCCaCUu-CUUac---CUAGCGCUAGC- -5'
16381 3' -49.3 NC_004084.1 + 21051 0.69 0.878068
Target:  5'- gAUCGGUGAAGAgaGUGGAaCGgcaGAguUCGa -3'
miRNA:   3'- gUAGCCACUUCU--UACCUaGCg--CU--AGC- -5'
16381 3' -49.3 NC_004084.1 + 3906 0.69 0.878068
Target:  5'- uCGUCGGcgucgacGAAGAcUGGAUCGaGGUCGc -3'
miRNA:   3'- -GUAGCCa------CUUCUuACCUAGCgCUAGC- -5'
16381 3' -49.3 NC_004084.1 + 1332 0.69 0.870024
Target:  5'- uCGUCcaGGaUGAGGAgAUGGG-CGCGAUCGc -3'
miRNA:   3'- -GUAG--CC-ACUUCU-UACCUaGCGCUAGC- -5'
16381 3' -49.3 NC_004084.1 + 4413 0.69 0.868383
Target:  5'- gCGUCGGUGGAGAAcgcuccGGAcucgacgacgccCGCGAUCa -3'
miRNA:   3'- -GUAGCCACUUCUUa-----CCUa-----------GCGCUAGc -5'
16381 3' -49.3 NC_004084.1 + 5425 1.1 0.004143
Target:  5'- uCAUCGGUGAAGAAUGGAUCGCGAUCGg -3'
miRNA:   3'- -GUAGCCACUUCUUACCUAGCGCUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.