miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16381 5' -54.5 NC_004084.1 + 12578 0.66 0.835436
Target:  5'- aCGgGCaaGCGAUGAUC--GAgGACGCg -3'
miRNA:   3'- -GCgUGagCGCUGCUAGugCUgCUGCG- -5'
16381 5' -54.5 NC_004084.1 + 4395 0.66 0.835436
Target:  5'- cCGgACUCGaCGACGccCGCGAucacCGGCGg -3'
miRNA:   3'- -GCgUGAGC-GCUGCuaGUGCU----GCUGCg -5'
16381 5' -54.5 NC_004084.1 + 57389 0.66 0.835436
Target:  5'- gGCGuccccCUCGuCGAgGAggucCugGAUGGCGCg -3'
miRNA:   3'- gCGU-----GAGC-GCUgCUa---GugCUGCUGCG- -5'
16381 5' -54.5 NC_004084.1 + 26327 0.66 0.835436
Target:  5'- aCGCACuggaaaUCGCaGCGGUUcuuGCGAUGAUGg -3'
miRNA:   3'- -GCGUG------AGCGcUGCUAG---UGCUGCUGCg -5'
16381 5' -54.5 NC_004084.1 + 8408 0.66 0.835436
Target:  5'- -cCGCUCgGCGACaacguGAUCAUGgGCGAgGCg -3'
miRNA:   3'- gcGUGAG-CGCUG-----CUAGUGC-UGCUgCG- -5'
16381 5' -54.5 NC_004084.1 + 16946 0.66 0.832811
Target:  5'- cCGCGCUCGagaucccacuuGCGAUCAuCGACGGgaucuccCGCc -3'
miRNA:   3'- -GCGUGAGCgc---------UGCUAGU-GCUGCU-------GCG- -5'
16381 5' -54.5 NC_004084.1 + 3255 0.66 0.826616
Target:  5'- aCGUcCUCGCcgucGACGAcgUCuacgguCGGCGGCGUg -3'
miRNA:   3'- -GCGuGAGCG----CUGCU--AGu-----GCUGCUGCG- -5'
16381 5' -54.5 NC_004084.1 + 39625 0.66 0.826616
Target:  5'- aCGUcCUCGaCGAguCGAUCguACG-CGACGCc -3'
miRNA:   3'- -GCGuGAGC-GCU--GCUAG--UGCuGCUGCG- -5'
16381 5' -54.5 NC_004084.1 + 57383 0.66 0.826616
Target:  5'- gGCGaacucgagCGCGccccCGAUCGCGuCGACGUc -3'
miRNA:   3'- gCGUga------GCGCu---GCUAGUGCuGCUGCG- -5'
16381 5' -54.5 NC_004084.1 + 21712 0.66 0.826616
Target:  5'- gGCgAC-CGuCGACGAgaucCGCGACGucauCGCa -3'
miRNA:   3'- gCG-UGaGC-GCUGCUa---GUGCUGCu---GCG- -5'
16381 5' -54.5 NC_004084.1 + 23679 0.66 0.826616
Target:  5'- aCGUGCUcacCGCGuccaucGCGAUCuggcucuCGACGACaGCg -3'
miRNA:   3'- -GCGUGA---GCGC------UGCUAGu------GCUGCUG-CG- -5'
16381 5' -54.5 NC_004084.1 + 41995 0.66 0.826616
Target:  5'- uCGcCACa-GCaGGCGAUCGCGuCGcCGCg -3'
miRNA:   3'- -GC-GUGagCG-CUGCUAGUGCuGCuGCG- -5'
16381 5' -54.5 NC_004084.1 + 49924 0.66 0.826616
Target:  5'- -uCGCUCGCGACGu---CGACGA-GUg -3'
miRNA:   3'- gcGUGAGCGCUGCuaguGCUGCUgCG- -5'
16381 5' -54.5 NC_004084.1 + 49344 0.66 0.817598
Target:  5'- gCGUAC-CGCGGCGAUCucCGA--ACGUu -3'
miRNA:   3'- -GCGUGaGCGCUGCUAGu-GCUgcUGCG- -5'
16381 5' -54.5 NC_004084.1 + 25010 0.66 0.817598
Target:  5'- gGCcCUCGU-ACGcgUGCGuCGACGCa -3'
miRNA:   3'- gCGuGAGCGcUGCuaGUGCuGCUGCG- -5'
16381 5' -54.5 NC_004084.1 + 57867 0.66 0.817598
Target:  5'- gGCGauCUCGuCGugGAgcUCcuCGACGGCGUc -3'
miRNA:   3'- gCGU--GAGC-GCugCU--AGu-GCUGCUGCG- -5'
16381 5' -54.5 NC_004084.1 + 30422 0.66 0.817598
Target:  5'- aCGgGCg-GCGACGGaaGCGAUGGCGa -3'
miRNA:   3'- -GCgUGagCGCUGCUagUGCUGCUGCg -5'
16381 5' -54.5 NC_004084.1 + 48039 0.66 0.817598
Target:  5'- aCGaGCUCGaCGuCGAacUCAUccgGACGGCGCu -3'
miRNA:   3'- -GCgUGAGC-GCuGCU--AGUG---CUGCUGCG- -5'
16381 5' -54.5 NC_004084.1 + 43815 0.66 0.817598
Target:  5'- aGCGC-CGgGAgaugGAUCAuuCGugGGCGCg -3'
miRNA:   3'- gCGUGaGCgCUg---CUAGU--GCugCUGCG- -5'
16381 5' -54.5 NC_004084.1 + 51336 0.66 0.817598
Target:  5'- uGCGCcCGCGA-GAUCuucguCGACGgguacACGCu -3'
miRNA:   3'- gCGUGaGCGCUgCUAGu----GCUGC-----UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.