miRNA display CGI


Results 21 - 40 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16381 5' -54.5 NC_004084.1 + 30422 0.66 0.817598
Target:  5'- aCGgGCg-GCGACGGaaGCGAUGGCGa -3'
miRNA:   3'- -GCgUGagCGCUGCUagUGCUGCUGCg -5'
16381 5' -54.5 NC_004084.1 + 22047 0.66 0.817598
Target:  5'- uGCAC-CGUGuCGAUCuCGGCGgagACGUc -3'
miRNA:   3'- gCGUGaGCGCuGCUAGuGCUGC---UGCG- -5'
16381 5' -54.5 NC_004084.1 + 39171 0.66 0.814856
Target:  5'- uGCaACUCaaaCGGCGGUUAaggggugccagggcCGAUGACGCa -3'
miRNA:   3'- gCG-UGAGc--GCUGCUAGU--------------GCUGCUGCG- -5'
16381 5' -54.5 NC_004084.1 + 36910 0.66 0.808393
Target:  5'- uCGCgGCUCGUu-CGAUCGgCGuucguCGACGCu -3'
miRNA:   3'- -GCG-UGAGCGcuGCUAGU-GCu----GCUGCG- -5'
16381 5' -54.5 NC_004084.1 + 47985 0.66 0.808393
Target:  5'- gGCAcCUCGCGgaGCGAcCGuCGACGuuGCc -3'
miRNA:   3'- gCGU-GAGCGC--UGCUaGU-GCUGCugCG- -5'
16381 5' -54.5 NC_004084.1 + 10132 0.66 0.808393
Target:  5'- aCGUACgaucgacCGUGAUaGGUCAcCGuCGACGCg -3'
miRNA:   3'- -GCGUGa------GCGCUG-CUAGU-GCuGCUGCG- -5'
16381 5' -54.5 NC_004084.1 + 57504 0.66 0.808393
Target:  5'- aGCAggcCGCaGCGAacUC-CGACGACGCc -3'
miRNA:   3'- gCGUga-GCGcUGCU--AGuGCUGCUGCG- -5'
16381 5' -54.5 NC_004084.1 + 24542 0.66 0.808393
Target:  5'- uGgACUgGCGGCGA-CugGAUGACc- -3'
miRNA:   3'- gCgUGAgCGCUGCUaGugCUGCUGcg -5'
16381 5' -54.5 NC_004084.1 + 27798 0.66 0.807462
Target:  5'- gGCACuugaUCGCGAaggggauggacauCGAcCGCGGCGucCGCg -3'
miRNA:   3'- gCGUG----AGCGCU-------------GCUaGUGCUGCu-GCG- -5'
16381 5' -54.5 NC_004084.1 + 52091 0.66 0.802783
Target:  5'- -aCGCUCGCGACGAUCucccguauucccccuACcagcACGGCGg -3'
miRNA:   3'- gcGUGAGCGCUGCUAG---------------UGc---UGCUGCg -5'
16381 5' -54.5 NC_004084.1 + 21807 0.66 0.799009
Target:  5'- uGCACcucaacgucagCGuCGACGGUgaggcgCugGACGAUGCa -3'
miRNA:   3'- gCGUGa----------GC-GCUGCUA------GugCUGCUGCG- -5'
16381 5' -54.5 NC_004084.1 + 40337 0.66 0.799009
Target:  5'- aGCGCgagCGUGAacuccauccccuCGAUCugGAUGGCcaGCu -3'
miRNA:   3'- gCGUGa--GCGCU------------GCUAGugCUGCUG--CG- -5'
16381 5' -54.5 NC_004084.1 + 40806 0.66 0.799009
Target:  5'- aGCuGCUCGCGAaGcUgGCGAuCGACGUc -3'
miRNA:   3'- gCG-UGAGCGCUgCuAgUGCU-GCUGCG- -5'
16381 5' -54.5 NC_004084.1 + 12117 0.66 0.799009
Target:  5'- aCGCccuucaGgUCGaauCGACGAUCgGCGACGGCGa -3'
miRNA:   3'- -GCG------UgAGC---GCUGCUAG-UGCUGCUGCg -5'
16381 5' -54.5 NC_004084.1 + 13534 0.66 0.799009
Target:  5'- cCGUcgACUCGCGA-GAUCACcuaccgGACGAauUGCu -3'
miRNA:   3'- -GCG--UGAGCGCUgCUAGUG------CUGCU--GCG- -5'
16381 5' -54.5 NC_004084.1 + 24060 0.66 0.799009
Target:  5'- aCGCGgUUGCGGCGuccAUCAUGccGCGAagUGCg -3'
miRNA:   3'- -GCGUgAGCGCUGC---UAGUGC--UGCU--GCG- -5'
16381 5' -54.5 NC_004084.1 + 57035 0.66 0.789458
Target:  5'- cCGCuucGCUgaUGCGGCGAUCgACGACcuccugguaGACGUc -3'
miRNA:   3'- -GCG---UGA--GCGCUGCUAG-UGCUG---------CUGCG- -5'
16381 5' -54.5 NC_004084.1 + 44616 0.66 0.789458
Target:  5'- gGCcgaUCGCcuCGGUCGCGACcaaccgGACGCg -3'
miRNA:   3'- gCGug-AGCGcuGCUAGUGCUG------CUGCG- -5'
16381 5' -54.5 NC_004084.1 + 26904 0.66 0.789458
Target:  5'- gGCAUccaUCGCGAuagUGGagGCGGCGACuGCc -3'
miRNA:   3'- gCGUG---AGCGCU---GCUagUGCUGCUG-CG- -5'
16381 5' -54.5 NC_004084.1 + 24153 0.66 0.789458
Target:  5'- gCGCACuUCGCGGC-AUgAUGgACGcCGCa -3'
miRNA:   3'- -GCGUG-AGCGCUGcUAgUGC-UGCuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.