miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16381 5' -54.5 NC_004084.1 + 281 0.67 0.74978
Target:  5'- -aCACUCaCGGCGGcUCgACGACGAcCGCc -3'
miRNA:   3'- gcGUGAGcGCUGCU-AG-UGCUGCU-GCG- -5'
16381 5' -54.5 NC_004084.1 + 323 0.68 0.718775
Target:  5'- aGCAggggCGCGGCGAcCAgGACGGCa- -3'
miRNA:   3'- gCGUga--GCGCUGCUaGUgCUGCUGcg -5'
16381 5' -54.5 NC_004084.1 + 750 0.68 0.685958
Target:  5'- gGCcuGCUCGUGGCGuUCACGgaggagcuugcggGCGAUGUc -3'
miRNA:   3'- gCG--UGAGCGCUGCuAGUGC-------------UGCUGCG- -5'
16381 5' -54.5 NC_004084.1 + 992 0.67 0.779749
Target:  5'- gGC-CUgaGaCGACGAUCACGcUGGCGUa -3'
miRNA:   3'- gCGuGAg-C-GCUGCUAGUGCuGCUGCG- -5'
16381 5' -54.5 NC_004084.1 + 1450 0.77 0.259882
Target:  5'- cCGCuuUCGCGuccCGAUCACGACGGucCGCc -3'
miRNA:   3'- -GCGugAGCGCu--GCUAGUGCUGCU--GCG- -5'
16381 5' -54.5 NC_004084.1 + 1809 0.69 0.65482
Target:  5'- gGCgaACUCGcCGACcg--GCGACGACGCc -3'
miRNA:   3'- gCG--UGAGC-GCUGcuagUGCUGCUGCG- -5'
16381 5' -54.5 NC_004084.1 + 1856 0.69 0.633231
Target:  5'- uGCAg-CGCGACGG--ACGACGuCGCc -3'
miRNA:   3'- gCGUgaGCGCUGCUagUGCUGCuGCG- -5'
16381 5' -54.5 NC_004084.1 + 2045 0.68 0.718775
Target:  5'- cCGUugUC-Cu-CGAUCACGAUGAuCGCg -3'
miRNA:   3'- -GCGugAGcGcuGCUAGUGCUGCU-GCG- -5'
16381 5' -54.5 NC_004084.1 + 2310 0.73 0.446371
Target:  5'- gCGCACgaCGuCGACGAggACGAUGACGa -3'
miRNA:   3'- -GCGUGa-GC-GCUGCUagUGCUGCUGCg -5'
16381 5' -54.5 NC_004084.1 + 2471 0.67 0.769893
Target:  5'- aCGCuggaUCGCGAgGAggAUGAUGACGa -3'
miRNA:   3'- -GCGug--AGCGCUgCUagUGCUGCUGCg -5'
16381 5' -54.5 NC_004084.1 + 3255 0.66 0.826616
Target:  5'- aCGUcCUCGCcgucGACGAcgUCuacgguCGGCGGCGUg -3'
miRNA:   3'- -GCGuGAGCG----CUGCU--AGu-----GCUGCUGCG- -5'
16381 5' -54.5 NC_004084.1 + 4395 0.66 0.835436
Target:  5'- cCGgACUCGaCGACGccCGCGAucacCGGCGg -3'
miRNA:   3'- -GCgUGAGC-GCUGCuaGUGCU----GCUGCg -5'
16381 5' -54.5 NC_004084.1 + 4520 0.69 0.64403
Target:  5'- uCGC-CUCGCaGCGcgUGCaGGCGAUGCa -3'
miRNA:   3'- -GCGuGAGCGcUGCuaGUG-CUGCUGCG- -5'
16381 5' -54.5 NC_004084.1 + 4912 0.8 0.158246
Target:  5'- uGUGCUCGCGACGAUCGgCGAgcuuugaucuCGACGUu -3'
miRNA:   3'- gCGUGAGCGCUGCUAGU-GCU----------GCUGCG- -5'
16381 5' -54.5 NC_004084.1 + 5171 0.68 0.697674
Target:  5'- aGCACUCGaGuCGAUCGacgacuggguaGACGAgGCg -3'
miRNA:   3'- gCGUGAGCgCuGCUAGUg----------CUGCUgCG- -5'
16381 5' -54.5 NC_004084.1 + 5214 0.68 0.718775
Target:  5'- aGCacGCUCGaGACGAUCACGGaagacuCGACa- -3'
miRNA:   3'- gCG--UGAGCgCUGCUAGUGCU------GCUGcg -5'
16381 5' -54.5 NC_004084.1 + 5459 1.11 0.001241
Target:  5'- gCGCACUCGCGACGAUCACGACGACGCc -3'
miRNA:   3'- -GCGUGAGCGCUGCUAGUGCUGCUGCG- -5'
16381 5' -54.5 NC_004084.1 + 5570 0.68 0.70826
Target:  5'- uCGUcgACU-GCGACGAUCugGccguCGGCGUc -3'
miRNA:   3'- -GCG--UGAgCGCUGCUAGugCu---GCUGCG- -5'
16381 5' -54.5 NC_004084.1 + 5851 0.67 0.769893
Target:  5'- aGCACgUCGCGAucaagaCGAUCgACGAgGAggaGCa -3'
miRNA:   3'- gCGUG-AGCGCU------GCUAG-UGCUgCUg--CG- -5'
16381 5' -54.5 NC_004084.1 + 8408 0.66 0.835436
Target:  5'- -cCGCUCgGCGACaacguGAUCAUGgGCGAgGCg -3'
miRNA:   3'- gcGUGAG-CGCUG-----CUAGUGC-UGCUgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.