miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16381 5' -54.5 NC_004084.1 + 22398 0.72 0.474713
Target:  5'- aCGCuAC-CG-GACGAUCAcgcuucucggcucCGACGACGCg -3'
miRNA:   3'- -GCG-UGaGCgCUGCUAGU-------------GCUGCUGCG- -5'
16381 5' -54.5 NC_004084.1 + 43783 0.74 0.373422
Target:  5'- gGCGCUCGcCGGCGGagagUC-CGGCGGCGa -3'
miRNA:   3'- gCGUGAGC-GCUGCU----AGuGCUGCUGCg -5'
16381 5' -54.5 NC_004084.1 + 17290 0.74 0.382089
Target:  5'- gGCGgUgGCGGCGGUgGCGGCGA-GCa -3'
miRNA:   3'- gCGUgAgCGCUGCUAgUGCUGCUgCG- -5'
16381 5' -54.5 NC_004084.1 + 19917 0.73 0.399821
Target:  5'- aCGaUGCUCGCGACGAUCGagGGCGAgGa -3'
miRNA:   3'- -GC-GUGAGCGCUGCUAGUg-CUGCUgCg -5'
16381 5' -54.5 NC_004084.1 + 51517 0.73 0.418071
Target:  5'- --aGCUCGUcgaGACGGUCGCGAuccCGACGUa -3'
miRNA:   3'- gcgUGAGCG---CUGCUAGUGCU---GCUGCG- -5'
16381 5' -54.5 NC_004084.1 + 29661 0.73 0.426447
Target:  5'- uGUACUCGCGcCGGuagcuccggggguUCGCGACGcgguCGCg -3'
miRNA:   3'- gCGUGAGCGCuGCU-------------AGUGCUGCu---GCG- -5'
16381 5' -54.5 NC_004084.1 + 39150 0.73 0.436818
Target:  5'- --aGCUCGCGAgG---GCGACGACGCu -3'
miRNA:   3'- gcgUGAGCGCUgCuagUGCUGCUGCG- -5'
16381 5' -54.5 NC_004084.1 + 2310 0.73 0.446371
Target:  5'- gCGCACgaCGuCGACGAggACGAUGACGa -3'
miRNA:   3'- -GCGUGa-GC-GCUGCUagUGCUGCUGCg -5'
16381 5' -54.5 NC_004084.1 + 23863 0.72 0.465819
Target:  5'- gCGCcCUCGCGAUGGaCGCGGUGAuCGCu -3'
miRNA:   3'- -GCGuGAGCGCUGCUaGUGCUGCU-GCG- -5'
16381 5' -54.5 NC_004084.1 + 27258 0.74 0.372562
Target:  5'- cCGCGCucgacgagaucUCGCgguccgaaccgcuGACGAUCGCGGCGcCGCu -3'
miRNA:   3'- -GCGUG-----------AGCG-------------CUGCUAGUGCUGCuGCG- -5'
16381 5' -54.5 NC_004084.1 + 50721 0.74 0.356491
Target:  5'- gGUACUucCGCGAgu-UCACGACGACGUa -3'
miRNA:   3'- gCGUGA--GCGCUgcuAGUGCUGCUGCG- -5'
16381 5' -54.5 NC_004084.1 + 37327 0.74 0.356491
Target:  5'- aCGCugaacGCUU-CGGCGAUCcCGACGACGCc -3'
miRNA:   3'- -GCG-----UGAGcGCUGCUAGuGCUGCUGCG- -5'
16381 5' -54.5 NC_004084.1 + 48878 0.86 0.068903
Target:  5'- gGgGCUCGCGACGAUgCACGACGGCagGCg -3'
miRNA:   3'- gCgUGAGCGCUGCUA-GUGCUGCUG--CG- -5'
16381 5' -54.5 NC_004084.1 + 56435 0.82 0.127335
Target:  5'- gGCACcgUCGCGAacgaCGAUCuCGACGGCGCg -3'
miRNA:   3'- gCGUG--AGCGCU----GCUAGuGCUGCUGCG- -5'
16381 5' -54.5 NC_004084.1 + 42289 0.78 0.219584
Target:  5'- cCGCGgUCacccguucacgaucgGCGACGAUCGCGACGAcCGUc -3'
miRNA:   3'- -GCGUgAG---------------CGCUGCUAGUGCUGCU-GCG- -5'
16381 5' -54.5 NC_004084.1 + 20026 0.77 0.253409
Target:  5'- gGCGCUCGaggaCGACGAUCGCGucucgucaguCGAUGCu -3'
miRNA:   3'- gCGUGAGC----GCUGCUAGUGCu---------GCUGCG- -5'
16381 5' -54.5 NC_004084.1 + 15687 0.77 0.266489
Target:  5'- gGCGCUCGCaGcCGAUCAacuCGcCGACGCg -3'
miRNA:   3'- gCGUGAGCG-CuGCUAGU---GCuGCUGCG- -5'
16381 5' -54.5 NC_004084.1 + 23578 0.75 0.324276
Target:  5'- cCGCugUCGuCGAgagccaGAUCGCGAUGgACGCg -3'
miRNA:   3'- -GCGugAGC-GCUg-----CUAGUGCUGC-UGCG- -5'
16381 5' -54.5 NC_004084.1 + 16399 0.75 0.340108
Target:  5'- cCGCcucGCUCGCGACGGcCACucgagcaaaGACGGCGUc -3'
miRNA:   3'- -GCG---UGAGCGCUGCUaGUG---------CUGCUGCG- -5'
16381 5' -54.5 NC_004084.1 + 9355 0.74 0.356491
Target:  5'- uCGCACgu-CGACGGUCACGAucuucCGAUGCc -3'
miRNA:   3'- -GCGUGagcGCUGCUAGUGCU-----GCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.