miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16382 5' -62.1 NC_004084.1 + 35144 0.66 0.422882
Target:  5'- uGGuCGGCCgCUCGGUcuccagaccgaACCGUUCGA-CAu -3'
miRNA:   3'- -CC-GCUGGgGAGCCG-----------UGGCGAGCUcGU- -5'
16382 5' -62.1 NC_004084.1 + 23796 0.66 0.422882
Target:  5'- aGCGACUCCcagaCGGCAauggaCGCggUGAGCGu -3'
miRNA:   3'- cCGCUGGGGa---GCCGUg----GCGa-GCUCGU- -5'
16382 5' -62.1 NC_004084.1 + 55617 0.66 0.422882
Target:  5'- -uCGGCCUCggcgucUGGUACaCGCUCGAGUg -3'
miRNA:   3'- ccGCUGGGGa-----GCCGUG-GCGAGCUCGu -5'
16382 5' -62.1 NC_004084.1 + 26423 0.66 0.422882
Target:  5'- -uCGAgCCCUCcaGGC-CCGCUCuGGCGg -3'
miRNA:   3'- ccGCUgGGGAG--CCGuGGCGAGcUCGU- -5'
16382 5' -62.1 NC_004084.1 + 33391 0.66 0.421982
Target:  5'- uGCGAUCuCCUCuggaucgGGCgGCUGCUCGAGa- -3'
miRNA:   3'- cCGCUGG-GGAG-------CCG-UGGCGAGCUCgu -5'
16382 5' -62.1 NC_004084.1 + 51265 0.66 0.41394
Target:  5'- cGcCGACCUCgacgaUCGGCGCgUGCUCG-GCGa -3'
miRNA:   3'- cC-GCUGGGG-----AGCCGUG-GCGAGCuCGU- -5'
16382 5' -62.1 NC_004084.1 + 17662 0.66 0.41394
Target:  5'- gGGCGACaCCCgagcacagggCGaCGCUGgUCGAGCu -3'
miRNA:   3'- -CCGCUG-GGGa---------GCcGUGGCgAGCUCGu -5'
16382 5' -62.1 NC_004084.1 + 20056 0.66 0.408631
Target:  5'- gGGuCGGCCCCUgCGGCcucgaggaucgcgagACCGUgaUCGGGg- -3'
miRNA:   3'- -CC-GCUGGGGA-GCCG---------------UGGCG--AGCUCgu -5'
16382 5' -62.1 NC_004084.1 + 23646 0.66 0.405116
Target:  5'- aGCGACUCCcagaCGGCAauggaCGCggUGAGCGa -3'
miRNA:   3'- cCGCUGGGGa---GCCGUg----GCGa-GCUCGU- -5'
16382 5' -62.1 NC_004084.1 + 23736 0.66 0.405116
Target:  5'- aGCGACUCCcagaCGGCAauggaCGCggUGAGCGa -3'
miRNA:   3'- cCGCUGGGGa---GCCGUg----GCGa-GCUCGU- -5'
16382 5' -62.1 NC_004084.1 + 10464 0.66 0.40424
Target:  5'- aGGCGAUCCaggaCGGCcugacggACgGcCUCGAGCGu -3'
miRNA:   3'- -CCGCUGGGga--GCCG-------UGgC-GAGCUCGU- -5'
16382 5' -62.1 NC_004084.1 + 22976 0.66 0.387827
Target:  5'- cGCGACCUCUUGGUcCUGgguguuggcCUCGAGUg -3'
miRNA:   3'- cCGCUGGGGAGCCGuGGC---------GAGCUCGu -5'
16382 5' -62.1 NC_004084.1 + 51142 0.66 0.387827
Target:  5'- gGGCGAUCCCgaacgaggaGGCGaucgagacggUCGC-CGAGCAc -3'
miRNA:   3'- -CCGCUGGGGag-------CCGU----------GGCGaGCUCGU- -5'
16382 5' -62.1 NC_004084.1 + 42348 0.66 0.387827
Target:  5'- aGGCGGCggaaCUCGaGCGCCagGC-CGAGCGg -3'
miRNA:   3'- -CCGCUGgg--GAGC-CGUGG--CGaGCUCGU- -5'
16382 5' -62.1 NC_004084.1 + 30858 0.66 0.371032
Target:  5'- gGGCGGCCCgCUCGuCA-CGUUCGAugGCGa -3'
miRNA:   3'- -CCGCUGGG-GAGCcGUgGCGAGCU--CGU- -5'
16382 5' -62.1 NC_004084.1 + 56391 0.66 0.371032
Target:  5'- -uCGACCUCUCGGagaCGCUCG-GCu -3'
miRNA:   3'- ccGCUGGGGAGCCgugGCGAGCuCGu -5'
16382 5' -62.1 NC_004084.1 + 5174 0.67 0.354739
Target:  5'- uGGCGGCCcgCCUgGGCagACCGCUCaccGCc -3'
miRNA:   3'- -CCGCUGG--GGAgCCG--UGGCGAGcu-CGu -5'
16382 5' -62.1 NC_004084.1 + 37130 0.67 0.338957
Target:  5'- aGCGuuuuccGCUUCgUCGGUGCCaGCUCGGGCAu -3'
miRNA:   3'- cCGC------UGGGG-AGCCGUGG-CGAGCUCGU- -5'
16382 5' -62.1 NC_004084.1 + 5004 0.67 0.338957
Target:  5'- cGGCuggaGCCCCUCGacGUAgUGCUCGAGgAa -3'
miRNA:   3'- -CCGc---UGGGGAGC--CGUgGCGAGCUCgU- -5'
16382 5' -62.1 NC_004084.1 + 50234 0.67 0.331259
Target:  5'- cGCGaACCCCacucugaGGCGUCGCUgGAGCGg -3'
miRNA:   3'- cCGC-UGGGGag-----CCGUGGCGAgCUCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.